Literature DB >> 33715941

Genomic and Genetic Approaches to Studying Antimalarial Drug Resistance and Plasmodium Biology.

John Okombo1, Mariko Kanai1, Ioanna Deni1, David A Fidock2.   

Abstract

Recent progress in genomics and molecular genetics has empowered novel approaches to study gene functions in disease-causing pathogens. In the human malaria parasite Plasmodium falciparum, the application of genome-based analyses, site-directed genome editing, and genetic systems that allow for temporal and quantitative regulation of gene and protein expression have been invaluable in defining the genetic basis of antimalarial resistance and elucidating candidate targets to accelerate drug discovery efforts. Using examples from recent studies, we review applications of some of these approaches in advancing our understanding of Plasmodium biology and illustrate their contributions and limitations in characterizing parasite genomic loci associated with antimalarial drug responses.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Plasmodium falciparum malaria; drug resistance; gene editing; genetic crosses; genomics; inducible expression

Mesh:

Substances:

Year:  2021        PMID: 33715941      PMCID: PMC8162148          DOI: 10.1016/j.pt.2021.02.007

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  120 in total

Review 1.  Malaria.

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Journal:  Nat Rev Dis Primers       Date:  2017-08-03       Impact factor: 52.329

2.  Glucosamine inhibits inositol acylation of the glycosylphosphatidylinositol anchors in intraerythrocytic Plasmodium falciparum.

Authors:  Ramachandra S Naik; Gowdahalli Krishnegowda; D Channe Gowda
Journal:  J Biol Chem       Date:  2002-11-04       Impact factor: 5.157

3.  Transformation of Plasmodium falciparum malaria parasites by homologous integration of plasmids that confer resistance to pyrimethamine.

Authors:  Y Wu; L A Kirkman; T E Wellems
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

4.  Genetic resistance to purine nucleoside phosphorylase inhibition in Plasmodium falciparum.

Authors:  Rodrigo G Ducati; Hilda A Namanja-Magliano; Rajesh K Harijan; J Eduardo Fajardo; Andras Fiser; Johanna P Daily; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-12       Impact factor: 11.205

5.  A Kelch13-defined endocytosis pathway mediates artemisinin resistance in malaria parasites.

Authors:  Jakob Birnbaum; Sarah Scharf; Sabine Schmidt; Ernst Jonscher; Wieteke Anna Maria Hoeijmakers; Sven Flemming; Christa Geeke Toenhake; Marius Schmitt; Ricarda Sabitzki; Bärbel Bergmann; Ulrike Fröhlke; Paolo Mesén-Ramírez; Alexandra Blancke Soares; Hendrik Herrmann; Richárd Bártfai; Tobias Spielmann
Journal:  Science       Date:  2020-01-03       Impact factor: 47.728

6.  Genetic architecture of artemisinin-resistant Plasmodium falciparum.

Authors:  Olivo Miotto; Roberto Amato; Elizabeth A Ashley; Bronwyn MacInnis; Jacob Almagro-Garcia; Chanaki Amaratunga; Pharath Lim; Daniel Mead; Samuel O Oyola; Mehul Dhorda; Mallika Imwong; Charles Woodrow; Magnus Manske; Jim Stalker; Eleanor Drury; Susana Campino; Lucas Amenga-Etego; Thuy-Nhien Nguyen Thanh; Hien Tinh Tran; Pascal Ringwald; Delia Bethell; Francois Nosten; Aung Pyae Phyo; Sasithon Pukrittayakamee; Kesinee Chotivanich; Char Meng Chuor; Chea Nguon; Seila Suon; Sokunthea Sreng; Paul N Newton; Mayfong Mayxay; Maniphone Khanthavong; Bouasy Hongvanthong; Ye Htut; Kay Thwe Han; Myat Phone Kyaw; Md Abul Faiz; Caterina I Fanello; Marie Onyamboko; Olugbenga A Mokuolu; Christopher G Jacob; Shannon Takala-Harrison; Christopher V Plowe; Nicholas P Day; Arjen M Dondorp; Chris C A Spencer; Gilean McVean; Rick M Fairhurst; Nicholas J White; Dominic P Kwiatkowski
Journal:  Nat Genet       Date:  2015-01-19       Impact factor: 38.330

7.  Plasmodium falciparum genetic crosses in a humanized mouse model.

Authors:  Ashley M Vaughan; Richard S Pinapati; Ian H Cheeseman; Nelly Camargo; Matthew Fishbaugher; Lisa A Checkley; Shalini Nair; Carolyn A Hutyra; François H Nosten; Timothy J C Anderson; Michael T Ferdig; Stefan H I Kappe
Journal:  Nat Methods       Date:  2015-06-01       Impact factor: 28.547

8.  Metabolic QTL analysis links chloroquine resistance in Plasmodium falciparum to impaired hemoglobin catabolism.

Authors:  Ian A Lewis; Mark Wacker; Kellen L Olszewski; Simon A Cobbold; Katelynn S Baska; Asako Tan; Michael T Ferdig; Manuel Llinás
Journal:  PLoS Genet       Date:  2014-01-02       Impact factor: 5.917

9.  Mutation tendency of mutator Plasmodium berghei with proofreading-deficient DNA polymerase δ.

Authors:  Hajime Honma; Mamoru Niikura; Fumie Kobayashi; Toshihiro Horii; Toshihiro Mita; Hiroyoshi Endo; Makoto Hirai
Journal:  Sci Rep       Date:  2016-11-15       Impact factor: 4.379

10.  Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum.

Authors:  Alistair Miles; Zamin Iqbal; Paul Vauterin; Richard Pearson; Susana Campino; Michel Theron; Kelda Gould; Daniel Mead; Eleanor Drury; John O'Brien; Valentin Ruano Rubio; Bronwyn MacInnis; Jonathan Mwangi; Upeka Samarakoon; Lisa Ranford-Cartwright; Michael Ferdig; Karen Hayton; Xin-Zhuan Su; Thomas Wellems; Julian Rayner; Gil McVean; Dominic Kwiatkowski
Journal:  Genome Res       Date:  2016-08-16       Impact factor: 9.043

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  4 in total

1.  Novel Compounds for Treating Malaria.

Authors:  Ram W Sabnis
Journal:  ACS Med Chem Lett       Date:  2021-07-18       Impact factor: 4.632

2.  Genome-wide functional screening of drug-resistance genes in Plasmodium falciparum.

Authors:  Shiroh Iwanaga; Rie Kubota; Tsubasa Nishi; Sumalee Kamchonwongpaisan; Somdet Srichairatanakool; Naoaki Shinzawa; Din Syafruddin; Masao Yuda; Chairat Uthaipibull
Journal:  Nat Commun       Date:  2022-10-18       Impact factor: 17.694

Review 3.  Methods Used to Investigate the Plasmodium falciparum Digestive Vacuole.

Authors:  Rebecca C S Edgar; Natalie A Counihan; Sheena McGowan; Tania F de Koning-Ward
Journal:  Front Cell Infect Microbiol       Date:  2022-01-13       Impact factor: 5.293

4.  Comparative Analysis of Plasmodium falciparum Genotyping via SNP Detection, Microsatellite Profiling, and Whole-Genome Sequencing.

Authors:  Mariko Kanai; Tomas Yeo; Victor Asua; Philip J Rosenthal; David A Fidock; Sachel Mok
Journal:  Antimicrob Agents Chemother       Date:  2021-10-25       Impact factor: 5.191

  4 in total

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