Literature DB >> 33715003

POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules.

Woonghee Lee1, Mehdi Rahimi1, Yeongjoon Lee1, Abigail Chiu1.   

Abstract

SUMMARY: The need for an efficient and cost-effective method is compelling in biomolecular NMR. To tackle this problem, we have developed the Poky suite, the revolutionized platform with boundless possibilities for advancing research and technology development in signal detection, resonance assignment, structure calculation, and relaxation studies with the help of many automation and user interface tools. This software is extensible and scalable by scripting and batching as well as providing modern graphical user interfaces and a diverse range of modules right out of the box. AVAILABILITY: Poky is freely available to non-commercial users at https://poky.clas.ucdenver.edu. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
© The Author(s) 2021. Published by Oxford University Press.

Entities:  

Year:  2021        PMID： 33715003     DOI： 10.1093/bioinformatics/btab180

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  iPick: Multiprocessing software for integrated NMR signal detection and validation.

Authors:  Mehdi Rahimi; Yeongjoon Lee; John L Markley; Woonghee Lee
Journal:  J Magn Reson       Date:  2021-05-07       Impact factor: 2.229

2.  Automated Determination of Nuclear Magnetic Resonance Chemical Shift Perturbations in Ligand Screening Experiments: The PICASSO Web Server.

Authors:  Vincenzo Laveglia; Andrea Giachetti; Linda Cerofolini; Kevin Haubrich; Marco Fragai; Alessio Ciulli; Antonio Rosato
Journal:  J Chem Inf Model       Date:  2021-11-29       Impact factor: 4.956

3.  POKY software tools encapsulating assignment strategies for solution and solid-state protein NMR data.

Authors:  Ira Manthey; Marco Tonelli; Lawrence Clos Ii; Mehdi Rahimi; John L Markley; Woonghee Lee
Journal:  J Struct Biol X       Date:  2022-08-28

4.  The Ni(II)-Binding Activity of the Intrinsically Disordered Region of Human NDRG1, a Protein Involved in Cancer Development.

Authors:  Ylenia Beniamino; Vittoria Cenni; Mario Piccioli; Stefano Ciurli; Barbara Zambelli
Journal:  Biomolecules       Date:  2022-09-09

5.  Anabaenopeptins from Nostoc edaphicum CCNP1411.

Authors:  Robert Konkel; Michał Grabski; Marta Cegłowska; Ewa Wieczerzak; Grzegorz Węgrzyn; Hanna Mazur-Marzec
Journal:  Int J Environ Res Public Health       Date:  2022-09-28       Impact factor: 4.614

6.  ssPINE: Probabilistic Algorithm for Automated Chemical Shift Assignment of Solid-State NMR Data from Complex Protein Systems.

Authors:  Adilakshmi Dwarasala; Mehdi Rahimi; John L Markley; Woonghee Lee
Journal:  Membranes (Basel)       Date:  2022-08-26

7.  NMR Structure and Biophysical Characterization of Thermophilic Single-Stranded DNA Binding Protein from Sulfolobus Solfataricus.

Authors:  Min June Yang; Jinwoo Kim; Yeongjoon Lee; Woonghee Lee; Chin-Ju Park
Journal:  Int J Mol Sci       Date:  2022-03-13       Impact factor: 6.208
  7 in total

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