Literature DB >> 33713727

New approach for the identification of potentially toxigenic Corynebacterium sp. using a multiplex PCR assay.

Fauzul Muna1, Kambang Sariadji1, Yuni Rukminiati1, Dwi Febriyana1, Tati Febrianti1, Ratih Dian Saraswati1, Ida Susanti1, Nelly Puspandari1, Anis Karuniawati2, Amarila Malik3, Amin Soebandrio4.   

Abstract

In diphtheria laboratory examinations, the PCR test can be applied to isolates and clinical specimens. This study aimed to develop a PCR assay to identify the species and toxigenicity of diphtheria-causing bacteria, including the prediction of some NTTB types. Seven reference isolates, four synthetic DNA samples, 36 stored isolates, and 487 clinical samples used for PCR optimization. The PCR results was confirmed by DNA sequence analysis. The results of the PCR examination of the 7 reference isolates and 36 stored isolates were similar to the results obtained using conventional methods as gold standard, both for diphtheria-causing and non-diphtheria-causing bacteria. The validation of the PCR results using DNA sequence analysis showed that there was no mispriming or misamplification. The multiplex PCR assay developed in this study could correctly identify the species and toxigenicity of diphtheria-causing bacteria, including the prediction of some NTTB types not yet covered by established PCR methods.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Diphtheria; PCR; Potentially toxigenic Corynebacterium; dtxR gene

Year:  2021        PMID: 33713727     DOI: 10.1016/j.mimet.2021.106198

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  1 in total

1.  Whole-genome sequencing data of Corynebacterium diphtheriae isolated from diphtheria outbreaks in Indonesia.

Authors:  Vivi Setiawaty; Nelly Puspandari; Ratih Dian Saraswati; Dwi Febriyana; Tati Febrianti; Yuni Rukminiati; Fauzul Muna; Fitriana Fitriana; Dodi Safari; Rahadian Pratama; Lisa Andriani Lienggonegoro; Sunarno Sunarno
Journal:  Data Brief       Date:  2022-07-14
  1 in total

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