Literature DB >> 33712848

DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions.

Patrick Wu1,2, Scott D Nelson1,3, Juan Zhao1, Cosby A Stone4, QiPing Feng5, Qingxia Chen1,6, Eric A Larson7, Bingshan Li8,9, Nancy J Cox9,10, C Michael Stein5,10,11, Elizabeth J Phillips11,12,13, Dan M Roden1,10,11, Joshua C Denny1,14, Wei-Qi Wei1.   

Abstract

OBJECTIVE: We developed and evaluated Drug-Drug Interaction Wide Association Study (DDIWAS). This novel method detects potential drug-drug interactions (DDIs) by leveraging data from the electronic health record (EHR) allergy list.
MATERIALS AND METHODS: To identify potential DDIs, DDIWAS scans for drug pairs that are frequently documented together on the allergy list. Using deidentified medical records, we tested 616 drugs for potential DDIs with simvastatin (a common lipid-lowering drug) and amlodipine (a common blood-pressure lowering drug). We evaluated the performance to rediscover known DDIs using existing knowledge bases and domain expert review. To validate potential novel DDIs, we manually reviewed patient charts and searched the literature.
RESULTS: DDIWAS replicated 34 known DDIs. The positive predictive value to detect known DDIs was 0.85 and 0.86 for simvastatin and amlodipine, respectively. DDIWAS also discovered potential novel interactions between simvastatin-hydrochlorothiazide, amlodipine-omeprazole, and amlodipine-valacyclovir. A software package to conduct DDIWAS is publicly available.
CONCLUSIONS: In this proof-of-concept study, we demonstrate the value of incorporating information mined from existing allergy lists to detect DDIs in a real-world clinical setting. Since allergy lists are routinely collected in EHRs, DDIWAS has the potential to detect and validate DDI signals across institutions.
© The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  adverse reactions; data mining; drug interactions; drug-related side effects; electronic health records; pharmacovigilance

Mesh:

Substances:

Year:  2021        PMID: 33712848      PMCID: PMC8279788          DOI: 10.1093/jamia/ocab019

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   7.942


  50 in total

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3.  International classification of diseases, 10th edition, clinical modification and procedure coding system: descriptive overview of the next generation HIPAA code sets.

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4.  Development of a large-scale de-identified DNA biobank to enable personalized medicine.

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Journal:  Clin Pharmacol Ther       Date:  2008-05-21       Impact factor: 6.875

5.  Normalized names for clinical drugs: RxNorm at 6 years.

Authors:  Stuart J Nelson; Kelly Zeng; John Kilbourne; Tammy Powell; Robin Moore
Journal:  J Am Med Inform Assoc       Date:  2011-04-21       Impact factor: 4.497

6.  Penicillin Allergy Is Not Necessarily Forever.

Authors:  Jason A Trubiano; N Franklin Adkinson; Elizabeth Jane Phillips
Journal:  JAMA       Date:  2017-07-04       Impact factor: 56.272

7.  Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Authors:  Joshua C Denny; Lisa Bastarache; Marylyn D Ritchie; Robert J Carroll; Raquel Zink; Jonathan D Mosley; Julie R Field; Jill M Pulley; Andrea H Ramirez; Erica Bowton; Melissa A Basford; David S Carrell; Peggy L Peissig; Abel N Kho; Jennifer A Pacheco; Luke V Rasmussen; David R Crosslin; Paul K Crane; Jyotishman Pathak; Suzette J Bielinski; Sarah A Pendergrass; Hua Xu; Lucia A Hindorff; Rongling Li; Teri A Manolio; Christopher G Chute; Rex L Chisholm; Eric B Larson; Gail P Jarvik; Murray H Brilliant; Catherine A McCarty; Iftikhar J Kullo; Jonathan L Haines; Dana C Crawford; Daniel R Masys; Dan M Roden
Journal:  Nat Biotechnol       Date:  2013-12       Impact factor: 54.908

8.  Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes.

Authors:  Paea Lependu; Srinivasan V Iyer; Cédrick Fairon; Nigam H Shah
Journal:  J Biomed Semantics       Date:  2012-04-24

9.  Statin induced myopathy and myalgia: time trend analysis and comparison of risk associated with statin class from 1991-2006.

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10.  Development and evaluation of an ensemble resource linking medications to their indications.

Authors:  Wei-Qi Wei; Robert M Cronin; Hua Xu; Thomas A Lasko; Lisa Bastarache; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2013-04-10       Impact factor: 4.497

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2.  Integrating gene expression and clinical data to identify drug repurposing candidates for hyperlipidemia and hypertension.

Authors:  Patrick Wu; QiPing Feng; Vern Eric Kerchberger; Scott D Nelson; Qingxia Chen; Bingshan Li; Todd L Edwards; Nancy J Cox; Elizabeth J Phillips; C Michael Stein; Dan M Roden; Joshua C Denny; Wei-Qi Wei
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 17.694

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