Literature DB >> 33712586

The amyloid structure of mouse RIPK3 (receptor interacting protein kinase 3) in cell necroptosis.

Xia-Lian Wu1,2,3, Hong Hu1,2,3, Xing-Qi Dong1,2,3, Jing Zhang1,2,3, Jian Wang1, Charles D Schwieters4, Jing Liu1,2,3, Guo-Xiang Wu1,2,3, Bing Li1, Jing-Yu Lin1,2,3, Hua-Yi Wang5, Jun-Xia Lu6.   

Abstract

RIPK3 amyloid complex plays crucial roles during TNF-induced necroptosis and in response to immune defense in both human and mouse. Here, we have structurally characterized mouse RIPK3 homogeneous self-assembly using solid-state NMR, revealing a well-ordered N-shaped amyloid core structure featured with 3 parallel in-register β-sheets. This structure differs from previously published human RIPK1/RIPK3 hetero-amyloid complex structure, which adopted a serpentine fold. Functional studies indicate both RIPK1-RIPK3 binding and RIPK3 amyloid formation are essential but not sufficient for TNF-induced necroptosis. The structural integrity of RIPK3 fibril with three β-strands is necessary for signaling. Molecular dynamics simulations with a mouse RIPK1/RIPK3 model indicate that the hetero-amyloid is less stable when adopting the RIPK3 fibril conformation, suggesting a structural transformation of RIPK3 from RIPK1-RIPK3 binding to RIPK3 amyloid formation. This structural transformation would provide the missing link connecting RIPK1-RIPK3 binding to RIPK3 homo-oligomer formation in the signal transduction.

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Year:  2021        PMID: 33712586      PMCID: PMC7955032          DOI: 10.1038/s41467-021-21881-2

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  44 in total

1.  Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures.

Authors:  Guillermo A Bermejo; G Marius Clore; Charles D Schwieters
Journal:  Protein Sci       Date:  2012-10-18       Impact factor: 6.725

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3.  Toll-like receptor 3-mediated necrosis via TRIF, RIP3, and MLKL.

Authors:  William J Kaiser; Haripriya Sridharan; Chunzi Huang; Pratyusha Mandal; Jason W Upton; Peter J Gough; Clark A Sehon; Robert W Marquis; John Bertin; Edward S Mocarski
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

4.  Identification of a novel homotypic interaction motif required for the phosphorylation of receptor-interacting protein (RIP) by RIP3.

Authors:  Xiaoqing Sun; Jianping Yin; Melissa A Starovasnik; Wayne J Fairbrother; Vishva M Dixit
Journal:  J Biol Chem       Date:  2001-12-04       Impact factor: 5.157

5.  Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes.

Authors:  Yaroslav Ryabov; Jeong-Yong Suh; Alexander Grishaev; G Marius Clore; Charles D Schwieters
Journal:  J Am Chem Soc       Date:  2009-07-15       Impact factor: 15.419

6.  Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core.

Authors:  Christian Wasmer; Adam Lange; Hélène Van Melckebeke; Ansgar B Siemer; Roland Riek; Beat H Meier
Journal:  Science       Date:  2008-03-14       Impact factor: 47.728

7.  Mixed lineage kinase domain-like protein MLKL causes necrotic membrane disruption upon phosphorylation by RIP3.

Authors:  Huayi Wang; Liming Sun; Lijing Su; Josep Rizo; Lei Liu; Li-Feng Wang; Fu-Sheng Wang; Xiaodong Wang
Journal:  Mol Cell       Date:  2014-04-03       Impact factor: 17.970

8.  WALTZ-DB: a benchmark database of amyloidogenic hexapeptides.

Authors:  Jacinte Beerten; Joost Van Durme; Rodrigo Gallardo; Emidio Capriotti; Louise Serpell; Frederic Rousseau; Joost Schymkowitz
Journal:  Bioinformatics       Date:  2015-01-18       Impact factor: 6.937

Review 9.  The Killer Pseudokinase Mixed Lineage Kinase Domain-Like Protein (MLKL).

Authors:  James M Murphy
Journal:  Cold Spring Harb Perspect Biol       Date:  2020-08-03       Impact factor: 9.708

10.  RIP3-mediated necroptosis is regulated by inter-filament assembly of RIP homotypic interaction motif.

Authors:  Hong Hu; Xialian Wu; Guoxiang Wu; Ning Nan; Jing Zhang; Xinxin Zhu; Yu Zhang; Zhaoqian Shu; Jia Liu; Xiaoyan Liu; Junxia Lu; Huayi Wang
Journal:  Cell Death Differ       Date:  2020-07-31       Impact factor: 15.828

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  5 in total

1.  Mosaic composition of RIP1-RIP3 signalling hub and its role in regulating cell death.

Authors:  Xin Chen; Rongfeng Zhu; Jinjin Zhong; Yongfa Ying; Wenxin Wang; Yating Cao; Hanyi Cai; Xiang Li; Jianwei Shuai; Jiahuai Han
Journal:  Nat Cell Biol       Date:  2022-03-07       Impact factor: 28.213

Review 2.  The evolution of regulated cell death pathways in animals and their evasion by pathogens.

Authors:  Bart Tummers; Douglas R Green
Journal:  Physiol Rev       Date:  2022-01-01       Impact factor: 37.312

3.  Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis.

Authors:  Yanxiang Meng; Katherine A Davies; Cheree Fitzgibbon; Samuel N Young; Sarah E Garnish; Christopher R Horne; Cindy Luo; Jean-Marc Garnier; Lung-Yu Liang; Angus D Cowan; Andre L Samson; Guillaume Lessene; Jarrod J Sandow; Peter E Czabotar; James M Murphy
Journal:  Nat Commun       Date:  2021-11-22       Impact factor: 14.919

4.  Ubiquitylation of RIPK3 beyond-the-RHIM can limit RIPK3 activity and cell death.

Authors:  Daniel Frank; Sarah E Garnish; Jarrod J Sandow; Ashley Weir; Lin Liu; Elise Clayer; Lizeth Meza; Maryam Rashidi; Simon A Cobbold; Simon R Scutts; Marcel Doerflinger; Holly Anderton; Kate E Lawlor; Najoua Lalaoui; Andrew J Kueh; Vik Ven Eng; Rebecca L Ambrose; Marco J Herold; Andre L Samson; Rebecca Feltham; James M Murphy; Gregor Ebert; Jaclyn S Pearson; James E Vince
Journal:  iScience       Date:  2022-06-17

5.  The role of RHIM in necroptosis.

Authors:  Theresa Riebeling; Ulrich Kunzendorf; Stefan Krautwald
Journal:  Biochem Soc Trans       Date:  2022-08-31       Impact factor: 4.919

  5 in total

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