Literature DB >> 33712569

Structural and functional characterization of a putative de novo gene in Drosophila.

Andreas Lange1, Prajal H Patel2, Brennen Heames1, Adam M Damry3, Thorsten Saenger4, Colin J Jackson3, Geoffrey D Findlay5, Erich Bornberg-Bauer6.   

Abstract

Comparative genomic studies have repeatedly shown that new protein-coding genes can emerge de novo from noncoding DNA. Still unknown is how and when the structures of encoded de novo proteins emerge and evolve. Combining biochemical, genetic and evolutionary analyses, we elucidate the function and structure of goddard, a gene which appears to have evolved de novo at least 50 million years ago within the Drosophila genus. Previous studies found that goddard is required for male fertility. Here, we show that Goddard protein localizes to elongating sperm axonemes and that in its absence, elongated spermatids fail to undergo individualization. Combining modelling, NMR and circular dichroism (CD) data, we show that Goddard protein contains a large central α-helix, but is otherwise partially disordered. We find similar results for Goddard's orthologs from divergent fly species and their reconstructed ancestral sequences. Accordingly, Goddard's structure appears to have been maintained with only minor changes over millions of years.

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Year:  2021        PMID: 33712569      PMCID: PMC7954818          DOI: 10.1038/s41467-021-21667-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  82 in total

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Authors:  Jonathan F Schmitz; Kristian K Ullrich; Erich Bornberg-Bauer
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3.  Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic cod.

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4.  The Drosophila don juan (dj) gene encodes a novel sperm specific protein component characterized by an unusual domain of a repetitive amino acid motif.

Authors:  A Santel; T Winhauer; N Blümer; R Renkawitz-Pohl
Journal:  Mech Dev       Date:  1997-06       Impact factor: 1.882

5.  De novo origination of a new protein-coding gene in Saccharomyces cerevisiae.

Authors:  Jing Cai; Ruoping Zhao; Huifeng Jiang; Wen Wang
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

6.  Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution.

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Journal:  BMC Genomics       Date:  2013-02-21       Impact factor: 3.969

7.  Long non-coding RNAs as a source of new peptides.

Authors:  Jorge Ruiz-Orera; Xavier Messeguer; Juan Antonio Subirana; M Mar Alba
Journal:  Elife       Date:  2014-09-16       Impact factor: 8.140

8.  Ultrastructural features of spermatozoa and their phylogenetic application in Zaprionus (Diptera, Drosophilidae).

Authors:  Letícia do Nascimento Andrade de Almeida Rego; Kaio Cesar Chaboli Alevi; Maria Tercília Vilela de Azeredo-Oliveira; Lilian Madi-Ravazzi
Journal:  Fly (Austin)       Date:  2016-03-10       Impact factor: 2.160

9.  Molecular mechanism and history of non-sense to sense evolution of antifreeze glycoprotein gene in northern gadids.

Authors:  Xuan Zhuang; Chun Yang; Katherine R Murphy; C-H Christina Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-14       Impact factor: 11.205

10.  The life cycle of Drosophila orphan genes.

Authors:  Nicola Palmieri; Carolin Kosiol; Christian Schlötterer
Journal:  Elife       Date:  2014-02-19       Impact factor: 8.140

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  8 in total

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Review 2.  The Origins and Functions of De Novo Genes: Against All Odds?

Authors:  Caroline M Weisman
Journal:  J Mol Evol       Date:  2022-04-22       Impact factor: 3.973

3.  Heterologous expression of naturally evolved putative de novo proteins with chaperones.

Authors:  Lars A Eicholt; Margaux Aubel; Katrin Berk; Erich Bornberg-Bauer; Andreas Lange
Journal:  Protein Sci       Date:  2022-08       Impact factor: 6.993

4.  A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster.

Authors:  Emily L Rivard; Andrew G Ludwig; Prajal H Patel; Anna Grandchamp; Sarah E Arnold; Alina Berger; Emilie M Scott; Brendan J Kelly; Grace C Mascha; Erich Bornberg-Bauer; Geoffrey D Findlay
Journal:  PLoS Genet       Date:  2021-09-03       Impact factor: 5.917

5.  Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution.

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Journal:  Genome Res       Date:  2021-11-22       Impact factor: 9.438

6.  New Genomic Signals Underlying the Emergence of Human Proto-Genes.

Authors:  Anna Grandchamp; Katrin Berk; Elias Dohmen; Erich Bornberg-Bauer
Journal:  Genes (Basel)       Date:  2022-01-31       Impact factor: 4.096

7.  Molecular Evolution across Mouse Spermatogenesis.

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Journal:  Mol Biol Evol       Date:  2022-02-03       Impact factor: 16.240

8.  Protein evidence of unannotated ORFs in Drosophila reveals diversity in the evolution and properties of young proteins.

Authors:  Eric B Zheng; Li Zhao
Journal:  Elife       Date:  2022-09-30       Impact factor: 8.713

  8 in total

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