Literature DB >> 33711345

Structure and Function of Chromatin Remodelers.

Alexis A Reyes1, Ryan D Marcum2, Yuan He3.   

Abstract

Chromatin remodelers act to regulate multiple cellular processes, such as transcription and DNA repair, by controlling access to genomic DNA. Four families of chromatin remodelers have been identified in yeast, each with non-redundant roles within the cell. There has been a recent surge in structural models of chromatin remodelers in complex with their nucleosomal substrate. These structural studies provide new insight into the mechanism of action for individual chromatin remodelers. In this review, we summarize available data for the structure and mechanism of action of the four chromatin remodeling complex families.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CHD; INO80; ISWI; SWI/SNF; chromatin remodeling

Mesh:

Substances:

Year:  2021        PMID: 33711345      PMCID: PMC8184634          DOI: 10.1016/j.jmb.2021.166929

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   6.151


  79 in total

1.  Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling.

Authors:  Mohamedi N Kagalwala; Benjamin J Glaus; Weiwei Dang; Martin Zofall; Blaine Bartholomew
Journal:  EMBO J       Date:  2004-05-06       Impact factor: 11.598

2.  Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

3.  Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.

Authors:  Martin Zofall; Jim Persinger; Stefan R Kassabov; Blaine Bartholomew
Journal:  Nat Struct Mol Biol       Date:  2006-03-05       Impact factor: 15.369

4.  Swc2 is a widely conserved H2AZ-binding module essential for ATP-dependent histone exchange.

Authors:  Wei-Hua Wu; Samar Alami; Edward Luk; Chwen-Huey Wu; Subhojit Sen; Gaku Mizuguchi; Debbie Wei; Carl Wu
Journal:  Nat Struct Mol Biol       Date:  2005-11-20       Impact factor: 15.369

5.  Structure of an actin-related subcomplex of the SWI/SNF chromatin remodeler.

Authors:  Heidi L Schubert; Jacqueline Wittmeyer; Margaret M Kasten; Kaede Hinata; David C Rawling; Annie Héroux; Bradley R Cairns; Christopher P Hill
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-11       Impact factor: 11.205

6.  The Swi2/Snf2 bromodomain is required for the displacement of SAGA and the octamer transfer of SAGA-acetylated nucleosomes.

Authors:  Ahmed H Hassan; Salma Awad; Philippe Prochasson
Journal:  J Biol Chem       Date:  2006-04-28       Impact factor: 5.157

7.  N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex.

Authors:  Wei-Hua Wu; Chwen-Huey Wu; Andreas Ladurner; Gaku Mizuguchi; Debbie Wei; Hua Xiao; Ed Luk; Anand Ranjan; Carl Wu
Journal:  J Biol Chem       Date:  2008-12-16       Impact factor: 5.157

8.  Concerted regulation of ISWI by an autoinhibitory domain and the H4 N-terminal tail.

Authors:  Johanna Ludwigsen; Sabrina Pfennig; Ashish K Singh; Christina Schindler; Nadine Harrer; Ignasi Forné; Martin Zacharias; Felix Mueller-Planitz
Journal:  Elife       Date:  2017-01-21       Impact factor: 8.140

9.  Structure and dynamics of the yeast SWR1-nucleosome complex.

Authors:  Oliver Willhoft; Mohamed Ghoneim; Chia-Liang Lin; Eugene Y D Chua; Martin Wilkinson; Yuriy Chaban; Rafael Ayala; Elizabeth A McCormack; Lorraine Ocloo; David S Rueda; Dale B Wigley
Journal:  Science       Date:  2018-10-12       Impact factor: 47.728

10.  Structure of the RSC complex bound to the nucleosome.

Authors:  Youpi Ye; Hao Wu; Kangjing Chen; Cedric R Clapier; Naveen Verma; Wenhao Zhang; Haiteng Deng; Bradley R Cairns; Ning Gao; Zhucheng Chen
Journal:  Science       Date:  2019-10-31       Impact factor: 47.728

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  7 in total

1.  Alignment of helicases on single-stranded DNA increases activity.

Authors:  Deniz Ozaslan; Alicia K Byrd; Binyam Belachew; Kevin D Raney
Journal:  Methods Enzymol       Date:  2022-04-26       Impact factor: 1.682

2.  Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor.

Authors:  Emily J Parnell; Timothy J Parnell; David J Stillman
Journal:  Genetics       Date:  2021-10-02       Impact factor: 4.402

3.  Chromatin Regulators Ahc1p and Eaf3p Positively Influence Nitrogen Metabolism in Saccharomyces cerevisiae.

Authors:  Yu Chen; Weizhu Zeng; Wenjian Ma; Wei Ma; Jingwen Zhou
Journal:  Front Microbiol       Date:  2022-05-10       Impact factor: 6.064

Review 4.  CHD4 orchestrates the symphony of T and B lymphocytes development and a good mediator in preventing from autoimmune disease.

Authors:  Miaomiao Jia; Xueqin Zou; Shuying Yin; Weihong Tian; Yangjing Zhao; Hui Wang; Guoying Xu; Weili Cai; Qixiang Shao
Journal:  Immun Inflamm Dis       Date:  2022-07

Review 5.  Recent Advances in Investigating Functional Dynamics of Chromatin.

Authors:  Xiangyan Shi; Ziwei Zhai; Yinglu Chen; Jindi Li; Lars Nordenskiöld
Journal:  Front Genet       Date:  2022-04-05       Impact factor: 4.772

Review 6.  The Role of Epigenetic Change in Therapy-Induced Neuroendocrine Prostate Cancer Lineage Plasticity.

Authors:  William K Storck; Allison M May; Thomas C Westbrook; Zhi Duan; Colm Morrissey; Joel A Yates; Joshi J Alumkal
Journal:  Front Endocrinol (Lausanne)       Date:  2022-07-14       Impact factor: 6.055

Review 7.  PARP1: Liaison of Chromatin Remodeling and Transcription.

Authors:  Wen Zong; Yamin Gong; Wenli Sun; Tangliang Li; Zhao-Qi Wang
Journal:  Cancers (Basel)       Date:  2022-08-27       Impact factor: 6.575

  7 in total

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