Literature DB >> 33711255

RNA Dysregulation: An Expanding Source of Cancer Immunotherapy Targets.

Yang Pan1, Kathryn E Kadash-Edmondson2, Robert Wang3, John Phillips4, Song Liu5, Antoni Ribas6, Richard Aplenc7, Owen N Witte8, Yi Xing9.   

Abstract

Cancer transcriptomes frequently exhibit RNA dysregulation. As the resulting aberrant transcripts may be translated into cancer-specific proteins, there is growing interest in exploiting RNA dysregulation as a source of tumor antigens (TAs) and thus novel immunotherapy targets. Recent advances in high-throughput technologies and rapid accumulation of multiomic cancer profiling data in public repositories have provided opportunities to systematically characterize RNA dysregulation in cancer and identify antigen targets for immunotherapy. However, given the complexity of cancer transcriptomes and proteomes, important conceptual and technological challenges exist. Here, we highlight the expanding repertoire of TAs arising from RNA dysregulation and introduce multiomic and big data strategies for identifying optimal immunotherapy targets. We discuss extant barriers for translating these targets into effective therapies as well as the implications for future research.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  CAR-T; RNA processing; RNA-seq; TCR; cancer immunotherapy; proteogenomics; proteome; transcriptome; tumor antigen

Mesh:

Substances:

Year:  2021        PMID: 33711255      PMCID: PMC8761020          DOI: 10.1016/j.tips.2021.01.006

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  92 in total

1.  Convergence of Acquired Mutations and Alternative Splicing of CD19 Enables Resistance to CART-19 Immunotherapy.

Authors:  Elena Sotillo; David M Barrett; Kathryn L Black; Asen Bagashev; Derek Oldridge; Glendon Wu; Robyn Sussman; Claudia Lanauze; Marco Ruella; Matthew R Gazzara; Nicole M Martinez; Colleen T Harrington; Elaine Y Chung; Jessica Perazzelli; Ted J Hofmann; Shannon L Maude; Pichai Raman; Alejandro Barrera; Saar Gill; Simon F Lacey; Jan J Melenhorst; David Allman; Elad Jacoby; Terry Fry; Crystal Mackall; Yoseph Barash; Kristen W Lynch; John M Maris; Stephan A Grupp; Andrei Thomas-Tikhonenko
Journal:  Cancer Discov       Date:  2015-10-29       Impact factor: 39.397

Review 2.  Cancer transcriptome profiling at the juncture of clinical translation.

Authors:  Marcin Cieślik; Arul M Chinnaiyan
Journal:  Nat Rev Genet       Date:  2017-12-27       Impact factor: 53.242

Review 3.  Mass-spectrometric exploration of proteome structure and function.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

Review 4.  Intergenically Spliced Chimeric RNAs in Cancer.

Authors:  Yuemeng Jia; Zhongqiu Xie; Hui Li
Journal:  Trends Cancer       Date:  2016-09

Review 5.  The role of A-to-I RNA editing in cancer development.

Authors:  Xiaoyan Xu; Yumeng Wang; Han Liang
Journal:  Curr Opin Genet Dev       Date:  2017-11-08       Impact factor: 5.578

Review 6.  Hallmarks of cancer: the next generation.

Authors:  Douglas Hanahan; Robert A Weinberg
Journal:  Cell       Date:  2011-03-04       Impact factor: 41.582

Review 7.  Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs.

Authors:  Carl R Walkley; Jin Billy Li
Journal:  Genome Biol       Date:  2017-10-30       Impact factor: 13.583

Review 8.  Lessons from non-canonical splicing.

Authors:  Christopher R Sibley; Lorea Blazquez; Jernej Ule
Journal:  Nat Rev Genet       Date:  2016-05-31       Impact factor: 53.242

9.  Genetic effects on gene expression across human tissues.

Authors:  Alexis Battle; Christopher D Brown; Barbara E Engelhardt; Stephen B Montgomery
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

10.  The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy.

Authors:  Rik G H Lindeboom; Michiel Vermeulen; Ben Lehner; Fran Supek
Journal:  Nat Genet       Date:  2019-10-28       Impact factor: 38.330

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  5 in total

Review 1.  Recent advances in sonodynamic immunotherapy.

Authors:  Hui Wang; Guo-Qing Sui; Zhi-Xia Sun; Jia-Rui Du; Yang Wang; Zong-Hua Yue; Han-Yu Zhang
Journal:  J Cancer Res Clin Oncol       Date:  2022-07-13       Impact factor: 4.322

2.  Editorial: The Clinical Application of Neoantigens.

Authors:  Jian-Guo Zhou; Zhenyu Ding; Huashan Shi; Min Cheng
Journal:  Front Immunol       Date:  2022-03-03       Impact factor: 7.561

3.  A widespread length-dependent splicing dysregulation in cancer.

Authors:  Sirui Zhang; Miaowei Mao; Yuesheng Lv; Yingqun Yang; Weijing He; Yongmei Song; Yongbo Wang; Yun Yang; Muthana Al Abo; Jennifer A Freedman; Steven R Patierno; Yang Wang; Zefeng Wang
Journal:  Sci Adv       Date:  2022-08-17       Impact factor: 14.957

4.  Fractionated irradiation of MCF7 breast cancer cells rewires a gene regulatory circuit towards a treatment-resistant stemness phenotype.

Authors:  Auchi Inalegwu; Bart Cuypers; Jürgen Claesen; Ann Janssen; Amelie Coolkens; Sarah Baatout; Kris Laukens; Winnok H De Vos; Roel Quintens
Journal:  Mol Oncol       Date:  2022-06-15       Impact factor: 7.449

5.  Characterization of circRNA-miRNA-mRNA networks regulating oxygen utilization in type II alveolar epithelial cells of Tibetan pigs.

Authors:  Yanan Yang; Yongqing Li; Haonan Yuan; Xuanbo Liu; Yue Ren; Caixia Gao; Ting Jiao; Yuan Cai; Shengguo Zhao
Journal:  Front Mol Biosci       Date:  2022-09-21
  5 in total

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