Literature DB >> 33710881

Per|Mut: Spatially Resolved Hydration Entropies from Atomistic Simulations.

Leonard P Heinz1, Helmut Grubmüller1.   

Abstract

The hydrophobic effect is essential for many biophysical phenomena and processes. It is governed by a fine-tuned balance between enthalpy and entropy contributions from the hydration shell. Whereas enthalpies can in principle be calculated from an atomistic simulation trajectory, calculating solvation entropies by sampling the extremely large configuration space is challenging and often impossible. Furthermore, to qualitatively understand how the balance is affected by individual side chains, chemical groups, or the protein topology, a local description of the hydration entropy is required. In this study, we present and assess the new method "Per|Mut", which uses a permutation reduction to alleviate the sampling problem by a factor of N! and employs a mutual information expansion to the third order to obtain spatially resolved hydration entropies. We tested the method on an argon system, a series of solvated n-alkanes, and solvated octanol.

Entities:  

Year:  2021        PMID: 33710881     DOI: 10.1021/acs.jctc.0c00961

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Spatially resolved free-energy contributions of native fold and molten-globule-like Crambin.

Authors:  Leonard P Heinz; Helmut Grubmüller
Journal:  Biophys J       Date:  2021-06-02       Impact factor: 3.699

Review 2.  Spatially Resolved Hydration Thermodynamics in Biomolecular Systems.

Authors:  Saumyak Mukherjee; Lars V Schäfer
Journal:  J Phys Chem B       Date:  2022-05-09       Impact factor: 3.466

  2 in total

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