Literature DB >> 33708396

Devitrification reduces beam-induced movement in cryo-EM.

Jan-Philip Wieferig1, Deryck J Mills1, Werner Kühlbrandt1.   

Abstract

As cryo-EM approaches the physical resolution limits imposed by electron optics and radiation damage, it becomes increasingly urgent to address the issues that impede high-resolution structure determination of biological specimens. One of the persistent problems has been beam-induced movement, which occurs when the specimen is irradiated with high-energy electrons. Beam-induced movement results in image blurring and loss of high-resolution information. It is particularly severe for biological samples in unsupported thin films of vitreous water. By controlled devitrification of conventionally plunge-frozen samples, the suspended film of vitrified water was converted into cubic ice, a polycrystalline, mechanically stable solid. It is shown that compared with vitrified samples, devitrification reduces beam-induced movement in the first 5 e Å-2 of an exposure by a factor of ∼4, substantially enhancing the contribution of the initial, minimally damaged frames to a structure. A 3D apoferritin map reconstructed from the first frames of 20 000 particle images of devitrified samples resolved undamaged side chains. Devitrification of frozen-hydrated specimens helps to overcome beam-induced specimen motion in single-particle cryo-EM, as a further step towards realizing the full potential of cryo-EM for high-resolution structure determination. © Wieferig et al. 2021.

Entities:  

Keywords:  beam-induced movement; cryo-EM; devitrification

Year:  2021        PMID: 33708396      PMCID: PMC7924229          DOI: 10.1107/S2052252520016243

Source DB:  PubMed          Journal:  IUCrJ        ISSN: 2052-2525            Impact factor:   4.769


  4 in total

1.  High-resolution single-particle cryo-EM of samples vitrified in boiling nitro-gen.

Authors:  Tyler Engstrom; Jonathan A Clinger; Katherine A Spoth; Oliver B Clarke; David S Closs; Richard Jayne; Benjamin A Apker; Robert E Thorne
Journal:  IUCrJ       Date:  2021-09-07       Impact factor: 4.769

2.  On the reduction in the effects of radiation damage to two-dimensional crystals of organic and biological molecules at liquid-helium temperature.

Authors:  Katerina Naydenova; Akiko Kamegawa; Mathew J Peet; Richard Henderson; Yoshinori Fujiyoshi; Christopher J Russo
Journal:  Ultramicroscopy       Date:  2022-03-19       Impact factor: 2.994

3.  Microsecond melting and revitrification of cryo samples: protein structure and beam-induced motion.

Authors:  Oliver F Harder; Jonathan M Voss; Pavel K Olshin; Marcel Drabbels; Ulrich J Lorenz
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-06-14       Impact factor: 5.699

4.  Forty years in cryoEM of membrane proteins.

Authors:  Werner Kühlbrandt
Journal:  Microscopy (Oxf)       Date:  2022-02-18       Impact factor: 1.571

  4 in total

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