Literature DB >> 33708242

Expression Profile Analysis Identifies a Novel Seven Immune-Related Gene Signature to Improve Prognosis Prediction of Glioblastoma.

Li Hu1, Zhibin Han1, Xingbo Cheng1, Sida Wang1, Yumeng Feng1, Zhiguo Lin1.   

Abstract

Glioblastoma multiform (GBM) is a malignant central nervous system cancer with dismal prognosis despite conventional therapies. Scientists have great interest in using immunotherapy for treating GBM because it has shown remarkable potential in many solid tumors, including melanoma, non-small cell lung cancer, and renal cell carcinoma. The gene expression patterns, clinical data of GBM individuals from the Cancer Genome Atlas database (TCGA), and immune-related genes (IRGs) from ImmPort were used to identify differentially expressed IRGs through the Wilcoxon rank-sum test. The association between each IRG and overall survival (OS) of patients was investigated by the univariate Cox regression analysis. LASSO Cox regression assessment was conducted to explore the prognostic potential of the IRGs of GBM and construct a risk score formula. A Kaplan-Meier curve was created to estimate the prognostic role of IRGs. The efficiency of the model was examined according to the area under the receiver operating characteristic (ROC) curve. The TCGA internal dataset and two GEO external datasets were used for model verification. We evaluated IRG expression in GBM and generated a risk model to estimate the prognosis of GBM individuals with seven optimal prognostic expressed IRGs. A landscape of 22 types of tumor-infiltrating immune cells (TIICs) in glioblastoma was identified, and we investigated the link between the seven IRGs and the immune checkpoints. Furthermore, there was a correlation between the IRGs and the infiltration level in GBM. Our data suggested that the seven IRGs identified in this study are not only significant prognostic predictors in GBM patients but can also be utilized to investigate the developmental mechanisms of GBM and in the design of personalized treatments for them.
Copyright © 2021 Hu, Han, Cheng, Wang, Feng and Lin.

Entities:  

Keywords:  expression profile; glioblastoma; immune-related genes; overall survival; prognosis prediction

Year:  2021        PMID: 33708242      PMCID: PMC7940837          DOI: 10.3389/fgene.2021.638458

Source DB:  PubMed          Journal:  Front Genet        ISSN: 1664-8021            Impact factor:   4.599


  4 in total

1.  Prognostic Significance of mRNA Expression RBBP8 or Its Methylation in Gliomas.

Authors:  Zhendong Liu; Xingbo Cheng; Shaochong Lin; Zhibin Han; Haoran Jin; Zheyu Luan; Pengxu Li; Wenjia Liang; Rongjun Qian; Yanzheng Gao
Journal:  Cell Mol Neurobiol       Date:  2022-02-01       Impact factor: 5.046

2.  Comprehensive Analysis of CD163 as a Prognostic Biomarker and Associated with Immune Infiltration in Glioblastoma Multiforme.

Authors:  Hao Li; Di Wang; Bolong Yi; Heng Cai; Zhuo Xi; Xin Lou; Zhen Li
Journal:  Biomed Res Int       Date:  2021-08-05       Impact factor: 3.411

3.  Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments.

Authors:  Jun Su; Yue Li; Qing Liu; Gang Peng; Chaoying Qin; Yang Li
Journal:  J Transl Med       Date:  2022-09-30       Impact factor: 8.440

4.  Bioinformatics analysis and identification of hub genes and immune-related molecular mechanisms in chronic myeloid leukemia.

Authors:  Fangyi Yao; Cui Zhao; Fangmin Zhong; Tingyu Qin; Shuqi Li; Jing Liu; Bo Huang; Xiaozhong Wang
Journal:  PeerJ       Date:  2022-01-18       Impact factor: 2.984

  4 in total

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