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Literature DB >> 33707337

Complete Genome Sequence of Brucella abortus 68, Isolated from Aborted Fetal Sheep in Ukraine.

Vitaliy Bolotin¹, Ganna Kovalenko², Nataliia Marchenko³, Oleksii Solodiankin³, Nataliia Rudova³, Valentina Kutsenko³, Eric Bortz^2,4, Anton Gerilovych³, Devin M Drown^5,6.

Abstract

The complete genome sequence of Brucella abortus 68, isolated from an aborted sheep fetus in Luhansk, Ukraine, was assembled using Nanopore sequences. Two circular chromosomes totaling 3,281,317 bp (N 50, 2,124,943 bp) comprised the complete genome sequence. The strain encodes the fosfomycin antibiotic resistance gene fosX, highlighting the risk of cross-species livestock and human infection.

Entities: CellLine Chemical Disease Species

Year: 2021 PMID： 33707337 PMCID： PMC7953300 DOI： 10.1128/MRA.01436-20

Source DB: PubMed Journal: Microbiol Resour Announc ISSN： 2576-098X

11 in total

1. Assembly of long, error-prone reads using repeat graphs.

Authors: Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal: Nat Biotechnol Date: 2019-04-01 Impact factor: 54.908

2. Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis.

Authors: Shirley M Halling; Brooke D Peterson-Burch; Betsy J Bricker; Richard L Zuerner; Zhang Qing; Ling-Ling Li; Vivek Kapur; David P Alt; Steven C Olsen
Journal: J Bacteriol Date: 2005-04 Impact factor: 3.490

3. Evaluation of Brucella MLVA typing for human brucellosis.

Authors: Sascha Al Dahouk; Philippe Le Flèche; Karsten Nöckler; Isabelle Jacques; Maggy Grayon; Holger C Scholz; Herbert Tomaso; Gilles Vergnaud; Heinrich Neubauer
Journal: J Microbiol Methods Date: 2007-01-03 Impact factor: 2.363

4. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors: Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal: Sci Rep Date: 2015-02-10 Impact factor: 4.379

5. Circlator: automated circularization of genome assemblies using long sequencing reads.

Authors: Martin Hunt; Nishadi De Silva; Thomas D Otto; Julian Parkhill; Jacqueline A Keane; Simon R Harris
Journal: Genome Biol Date: 2015-12-29 Impact factor: 13.583

6. Mash: fast genome and metagenome distance estimation using MinHash.

Authors: Brian D Ondov; Todd J Treangen; Páll Melsted; Adam B Mallonee; Nicholas H Bergman; Sergey Koren; Adam M Phillippy
Journal: Genome Biol Date: 2016-06-20 Impact factor: 13.583

7. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

Authors: Alice R Wattam; James J Davis; Rida Assaf; Sébastien Boisvert; Thomas Brettin; Christopher Bun; Neal Conrad; Emily M Dietrich; Terry Disz; Joseph L Gabbard; Svetlana Gerdes; Christopher S Henry; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Eric K Nordberg; Gary J Olsen; Daniel E Murphy-Olson; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; Veronika Vonstein; Andrew Warren; Fangfang Xia; Hyunseung Yoo; Rick L Stevens
Journal: Nucleic Acids Res Date: 2016-11-29 Impact factor: 16.971

Complete Genome Sequence of Brucella abortus 68, Isolated from Aborted Fetal Sheep in Ukraine.

1. Assembly of long, error-prone reads using repeat graphs.

2. Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis.

3. Evaluation of Brucella MLVA typing for human brucellosis.

4. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

5. Circlator: automated circularization of genome assemblies using long sequencing reads.

6. Mash: fast genome and metagenome distance estimation using MinHash.

7. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

8. Fast and accurate de novo genome assembly from long uncorrected reads.

9. Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay.

10. NCBI prokaryotic genome annotation pipeline.

1. Genome Sequence of Erysipelothrix sp. Strain Poltava, Isolated from Acute Septic Erysipelas of Swine in Ukraine.

2. Long-Read Sequencing and Hybrid Assembly for Genomic Analysis of Clinical Brucella melitensis Isolates.