Literature DB >> 33707336

Draft Genome Sequence of Dietzia sp. Strain SYD-A1, Isolated from Coal Seam Formation Water.

Silas H W Vick1,2,3, Paul Greenfield2, Sasha G Tetu4, David J Midgley2, Ian T Paulsen4.   

Abstract

Subsurface coal seams harbor an array of diverse microbial species subsisting as a community on the organic matter present in coal. Here, we present the annotated genome sequence of Dietzia sp. strain SYD-A1, a bacterium isolated from a terrestrial subsurface coal seam in New South Wales, Australia.
Copyright © 2021 Vick et al.

Entities:  

Year:  2021        PMID： 33707336      PMCID： PMC7953299          DOI： 10.1128/MRA.01341-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
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2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

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Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

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4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  IMG ER: a system for microbial genome annotation expert review and curation.

Authors:  Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal:  Bioinformatics       Date:  2009-06-27       Impact factor: 6.937

Review 6.  Structural and sequence-based classification of glycoside hydrolases.

Authors:  B Henrissat; G Davies
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

7.  Alkane-degrading properties of Dietzia sp. H0B, a key player in the Prestige oil spill biodegradation (NW Spain).

Authors:  J Alonso-Gutiérrez; M Teramoto; A Yamazoe; S Harayama; A Figueras; B Novoa
Journal:  J Appl Microbiol       Date:  2011-08-04       Impact factor: 3.772

8.  Phylogeny.fr: robust phylogenetic analysis for the non-specialist.

Authors:  A Dereeper; V Guignon; G Blanc; S Audic; S Buffet; F Chevenet; J-F Dufayard; S Guindon; V Lefort; M Lescot; J-M Claverie; O Gascuel
Journal:  Nucleic Acids Res       Date:  2008-04-19       Impact factor: 16.971

9.  Genomic and phenotypic insights point to diverse ecological strategies by facultative anaerobes obtained from subsurface coal seams.

Authors:  Silas H W Vick; Paul Greenfield; Sasha G Tetu; David J Midgley; Ian T Paulsen
Journal:  Sci Rep       Date:  2019-11-07       Impact factor: 4.379

10.  dbCAN2: a meta server for automated carbohydrate-active enzyme annotation.

Authors:  Han Zhang; Tanner Yohe; Le Huang; Sarah Entwistle; Peizhi Wu; Zhenglu Yang; Peter K Busk; Ying Xu; Yanbin Yin
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971
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