Literature DB >> 33707335

Complete Genome Sequence of Rhodococcus sp. Strain M8, a Platform Strain for Acrylic Monomer Production.

Andrey D Novikov1,2, Konstantin V Lavrov1,2, Artem S Kasianov3, Maxim A Topchiy4, Tatyana V Gerasimova5,2, Alexander S Yanenko5,2.   

Abstract

We report a 6.27-Mbp complete genome of Rhodococcus sp. strain M8, an originally discovered strain that is now under investigation for production of acrylic monomers. The genome consists of a 6.1-Mbp circular chromosome and a 173.2-kbp plasmid.
Copyright © 2021 Novikov et al.

Entities:  

Year:  2021        PMID： 33707335      PMCID： PMC7953298          DOI： 10.1128/MRA.01314-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

1.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

2.  In vivo metal selectivity of metal-dependent biosynthesis of cobalt-type nitrile hydratase in Rhodococcus bacteria: a new look at the nitrile hydratase maturation mechanism?

Authors:  Konstantin V Lavrov; Anna O Shemyakina; Elena G Grechishnikova; Andrey D Novikov; Tatyana I Kalinina; Alexander S Yanenko
Journal:  Metallomics       Date:  2019-06-19       Impact factor: 4.526

3.  New cblA gene participates in regulation of cobalt-dependent transcription of nitrile hydratase genes in Rhodococcus rhodochrous.

Authors:  Konstantin V Lavrov; Anna O Shemyakina; Elena G Grechishnikova; Andrey D Novikov; Denis D Derbikov; Tatyana I Kalinina; Alexander S Yanenko
Journal:  Res Microbiol       Date:  2018-05-23       Impact factor: 3.992

4.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

5.  Circlator: automated circularization of genome assemblies using long sequencing reads.

Authors:  Martin Hunt; Nishadi De Silva; Thomas D Otto; Julian Parkhill; Jacqueline A Keane; Simon R Harris
Journal:  Genome Biol       Date:  2015-12-29       Impact factor: 13.583

6.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

7.  Draft Genome Sequence of Rhodococcus sp. Strain M8, Which Can Degrade a Broad Range of Nitriles.

Authors:  Andrey D Novikov; Konstantin V Lavrov; Artem S Kasianov; Tatyana V Gerasimova; Alexander S Yanenko
Journal:  Genome Announc       Date:  2018-02-08

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

9.  The complete genome sequence of the nitrile biocatalyst Rhodocccus rhodochrous ATCC BAA-870.

Authors:  Joni Frederick; Fritha Hennessy; Uli Horn; Pilar de la Torre Cortés; Marcel van den Broek; Ulrich Strych; Richard Willson; Charles A Hefer; Jean-Marc G Daran; Trevor Sewell; Linda G Otten; Dean Brady
Journal:  BMC Genomics       Date:  2020-01-02       Impact factor: 3.969
  9 in total

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