Literature DB >> 33707331

Complete Genome Sequences of Two Staphylococcus saccharolyticus Strains Isolated from Prosthetic Joint Infections.

Mastaneh Afshar1, Anja Poehlein2, Bo Söderquist3, Holger Brüggemann4.   

Abstract

Staphylococcus saccharolyticus is a human skin bacterium and is occasionally associated with prosthetic joint infections (PJIs). Here, we report the complete genome sequences of two strains that were isolated from shoulder and hip PJIs. The genomes show signs of reductive evolution; around 21% of all coding sequences are inactivated by frameshift mutations.
Copyright © 2021 Afshar et al.

Entities:  

Year:  2021        PMID： 33707331      PMCID： PMC7953294          DOI： 10.1128/MRA.00157-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  13 in total

1.  Minimap2: pairwise alignment for nucleotide sequences.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2018-09-15       Impact factor: 6.937

2.  Qualimap: evaluating next-generation sequencing alignment data.

Authors:  Fernando García-Alcalde; Konstantin Okonechnikov; José Carbonell; Luis M Cruz; Stefan Götz; Sonia Tarazona; Joaquín Dopazo; Thomas F Meyer; Ana Conesa
Journal:  Bioinformatics       Date:  2012-08-22       Impact factor: 6.937

3.  Isolation and identification of Peptococcus saccharolyticus from human skin.

Authors:  C A Evans; K L Mattern; S L Hallam
Journal:  J Clin Microbiol       Date:  1978-03       Impact factor: 5.948

4.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

5.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

6.  Staphylococcus saccharolyticus Isolated From Blood Cultures and Prosthetic Joint Infections Exhibits Excessive Genome Decay.

Authors:  Holger Brüggemann; Anja Poehlein; Elzbieta Brzuszkiewicz; Carsten Scavenius; Jan J Enghild; Munir A Al-Zeer; Volker Brinkmann; Anders Jensen; Bo Söderquist
Journal:  Front Microbiol       Date:  2019-03-12       Impact factor: 5.640

7.  Staphylococcus saccharolyticus: An Overlooked Human Skin Colonizer.

Authors:  Charlotte M Ahle; Kristian Stødkilde; Mastaneh Afshar; Anja Poehlein; Lesley A Ogilvie; Bo Söderquist; Jennifer Hüpeden; Holger Brüggemann
Journal:  Microorganisms       Date:  2020-07-23

8.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
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  1 in total

1.  Staphylococcus saccharolyticus Associated with Prosthetic Joint Infections: Clinical Features and Genomic Characteristics.

Authors:  Bo Söderquist; Mastaneh Afshar; Anja Poehlein; Holger Brüggemann
Journal:  Pathogens       Date:  2021-03-26
  1 in total

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