Literature DB >> 33707329

Coding-Complete Genome Sequences and Mutation Profiles of Nine SARS-CoV-2 Strains Detected from COVID-19 Patients in Bangladesh.

Nihad Adnan1,2, Mohib Ullah Khondoker2,3,4, M Shaminur Rahman5, M Firoz Ahmed1, Shahana Sharmin6, Nadim Sharif1, Nafisa Azmuda1, Salma Akter1, Shamsun Nahar1, Taslin Jahan Mou1, Mahfuza Marzan1, Syeda Moriam Liza1, Nowshin Jahan2, Tamanna Ali2, Shahad Saif Khandker2, Maha Jamiruddin2, Mousumi Akter Chaity2, Laura Grace Caller7, M Ahsanul Haq2, Mohd Raeed Jamiruddin8,6.   

Abstract

Here, we report the coding-complete genome sequences of nine clinical severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants and their mutations. The samples were collected from nine Bangladeshi coronavirus disease 2019 (COVID-19) patients. We have identified the E484K escape mutation and the S359T mutation within the spike protein coding region of the sequenced genomes.
Copyright © 2021 Adnan et al.

Entities:  

Year:  2021        PMID： 33707329      PMCID： PMC7953292          DOI： 10.1128/MRA.00124-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  5 in total

1.  bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.

Authors:  Graham J Etherington; Ricardo H Ramirez-Gonzalez; Dan MacLean
Journal:  Bioinformatics       Date:  2015-03-29       Impact factor: 6.937

2.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

3.  Data, disease and diplomacy: GISAID's innovative contribution to global health.

Authors:  Stefan Elbe; Gemma Buckland-Merrett
Journal:  Glob Chall       Date:  2017-01-10

4.  Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2.

Authors:  Yvonne C F Su; Danielle E Anderson; Barnaby E Young; Martin Linster; Feng Zhu; Jayanthi Jayakumar; Yan Zhuang; Shirin Kalimuddin; Jenny G H Low; Chee Wah Tan; Wan Ni Chia; Tze Minn Mak; Sophie Octavia; Jean-Marc Chavatte; Raphael T C Lee; Surinder Pada; Seow Yen Tan; Louisa Sun; Gabriel Z Yan; Sebastian Maurer-Stroh; Ian H Mendenhall; Yee-Sin Leo; David Chien Lye; Lin-Fa Wang; Gavin J D Smith
Journal:  mBio       Date:  2020-07-21       Impact factor: 7.867

5.  Variant analysis of SARS-CoV-2 genomes.

Authors:  Takahiko Koyama; Daniel Platt; Laxmi Parida
Journal:  Bull World Health Organ       Date:  2020-06-02       Impact factor: 9.408
  5 in total
  4 in total

Review 1.  Microfluidics Technology in SARS-CoV-2 Diagnosis and Beyond: A Systematic Review.

Authors:  Mohd Raeed Jamiruddin; Bushra Ayat Meghla; Dewan Zubaer Islam; Taslima Akter Tisha; Shahad Saif Khandker; Mohib Ullah Khondoker; Md Ahsanul Haq; Nihad Adnan; Mainul Haque
Journal:  Life (Basel)       Date:  2022-04-27

2.  Extensive genetic diversity with novel mutations in spike glycoprotein of severe acute respiratory syndrome coronavirus 2, Bangladesh in late 2020.

Authors:  S Z Afrin; S K Paul; J A Begum; S A Nasreen; S Ahmed; F U Ahmad; M A Aziz; R Parvin; M S Aung; N Kobayashi
Journal:  New Microbes New Infect       Date:  2021-04-24

Review 3.  A Systematic Review on COVID-19 Vaccine Strategies, Their Effectiveness, and Issues.

Authors:  Shahad Saif Khandker; Brian Godman; Md Irfan Jawad; Bushra Ayat Meghla; Taslima Akter Tisha; Mohib Ullah Khondoker; Md Ahsanul Haq; Jaykaran Charan; Ali Azam Talukder; Nafisa Azmuda; Shahana Sharmin; Mohd Raeed Jamiruddin; Mainul Haque; Nihad Adnan
Journal:  Vaccines (Basel)       Date:  2021-11-24

4.  Longitudinal Antibody Dynamics Against Structural Proteins of SARS-CoV-2 in Three COVID-19 Patients Shows Concurrent Development of IgA, IgM, and IgG.

Authors:  Mohd Raeed Jamiruddin; Md Ahsanul Haq; Kazuhito Tomizawa; Eiry Kobatake; Masayasu Mie; Sohel Ahmed; Shahad Saif Khandker; Tamanna Ali; Nowshin Jahan; Mumtarin Jannat Oishee; Mohib Ullah Khondoker; Bijon Kumar Sil; Mainul Haque; Nihad Adnan
Journal:  J Inflamm Res       Date:  2021-06-14
  4 in total

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