Literature DB >> 33707325

Coding-Complete Genome Sequence and Phylogenetic Relatedness of a SARS-CoV-2 Strain Detected in March 2020 in Cameroon.

Richard Njouom1, Serge Alain Sadeuh-Mba2, Jules Tchatchueng2, Moussa Moïse Diagne3, Ndongo Dia3, Paul Alain Ngoupo Tagnouokam2, Yap Boum4,5, Achta Hamadou2,5, Linda Esso5, Ousmane Faye3, Mathurin Cyrille Tejiokem2, Marie Claire Okomo6, Alain Etoundi5, Elisabeth Carniel2, Sara Eyangoh2,5.   

Abstract

We describe the coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain obtained in Cameroon from a 58-year-old French patient who arrived from France on 24 February 2020. Phylogenetic analysis showed that this virus, named hCoV-19/Cameroon/1958-CMR-YAO/2020, belongs to lineage B.1.5 and is closely related to an isolate from France.
Copyright © 2021 Njouom et al.

Entities:  

Year:  2021        PMID： 33707325      PMCID： PMC7953288          DOI： 10.1128/MRA.00093-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  7 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

2.  Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.

Authors:  Andy Kilianski; Patrick Carcel; Shijie Yao; Pierce Roth; Josh Schulte; Greg B Donarum; Ed T Fochler; Jessica M Hill; Alvin T Liem; Michael R Wiley; Jason T Ladner; Bradley P Pfeffer; Oliver Elliot; Alexandra Petrosov; Dereje D Jima; Tyghe G Vallard; Melanie C Melendrez; Evan Skowronski; Phenix-Lan Quan; W Ian Lipkin; Henry S Gibbons; David L Hirschberg; Gustavo F Palacios; C Nicole Rosenzweig
Journal:  BMC Bioinformatics       Date:  2015-12-29       Impact factor: 3.169

3.  SMS: Smart Model Selection in PhyML.

Authors:  Vincent Lefort; Jean-Emmanuel Longueville; Olivier Gascuel
Journal:  Mol Biol Evol       Date:  2017-09-01       Impact factor: 16.240

4.  Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR.

Authors:  Victor M Corman; Olfert Landt; Marco Kaiser; Richard Molenkamp; Adam Meijer; Daniel Kw Chu; Tobias Bleicker; Sebastian Brünink; Julia Schneider; Marie Luisa Schmidt; Daphne Gjc Mulders; Bart L Haagmans; Bas van der Veer; Sharon van den Brink; Lisa Wijsman; Gabriel Goderski; Jean-Louis Romette; Joanna Ellis; Maria Zambon; Malik Peiris; Herman Goossens; Chantal Reusken; Marion Pg Koopmans; Christian Drosten
Journal:  Euro Surveill       Date:  2020-01

5.  A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.

Authors:  Andrew Rambaut; Edward C Holmes; Áine O'Toole; Verity Hill; John T McCrone; Christopher Ruis; Louis du Plessis; Oliver G Pybus
Journal:  Nat Microbiol       Date:  2020-07-15       Impact factor: 17.745

6.  Evolution and genetic diversity of SARSCoV-2 in Africa using whole genome sequences.

Authors:  Babatunde Olarenwaju Motayo; Olukunle Oluwapamilerin Oluwasemowo; Babatunde Adebiyi Olusola; Paul Akiniyi Akinduti; Olamide T Arege; Yemisi Dorcas Obafemi; Adedayo Omotayo Faneye; Patrick Omoregbe Isibor; Oluwadurotimi Samuel Aworunse; Solomon Uche Oranusi
Journal:  Int J Infect Dis       Date:  2020-11-28       Impact factor: 3.623

7.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245
  7 in total

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