Literature DB >> 33707317

Genome Sequences for Two Acinetobacter baumannii Strains Obtained Using the Unicycler Hybrid Assembly Pipeline.

John M Farrow1, Everett C Pesci2, Daniel J Slade3.   

Abstract

Here, we report a complete genome sequence for Acinetobacter baumannii strain ATCC 17961, with plasmid sequences, and a high-quality (>98% complete) build for A. baumannii strain AB09-003. These genome sequences were generated by combining short-read Illumina and long-read Oxford Nanopore MinION sequencing data using the Unicycler hybrid assembly pipeline.
Copyright © 2021 Farrow et al.

Entities:  

Year:  2021        PMID： 33707317      PMCID： PMC7953280          DOI： 10.1128/MRA.00017-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

Review 1.  Clinical and Pathophysiological Overview of Acinetobacter Infections: a Century of Challenges.

Authors:  Darren Wong; Travis B Nielsen; Robert A Bonomo; Paul Pantapalangkoor; Brian Luna; Brad Spellberg
Journal:  Clin Microbiol Rev       Date:  2017-01       Impact factor: 26.132

2.  A study of the Moraxella group. II. Oxidative-negative species (genus Acinetobacter).

Authors:  P Baumann; M Doudoroff; R Y Stanier
Journal:  J Bacteriol       Date:  1968-05       Impact factor: 3.490

3.  SEROLOGY OF THE MIMA-HERELLEA GROUP AND THE GENUS MORAXELLA.

Authors:  P D MITCHELL; R G BURRELL
Journal:  J Bacteriol       Date:  1964-04       Impact factor: 3.490

4.  Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis.

Authors:  Evelina Tacconelli; Elena Carrara; Alessia Savoldi; Stephan Harbarth; Marc Mendelson; Dominique L Monnet; Céline Pulcini; Gunnar Kahlmeter; Jan Kluytmans; Yehuda Carmeli; Marc Ouellette; Kevin Outterson; Jean Patel; Marco Cavaleri; Edward M Cox; Chris R Houchens; M Lindsay Grayson; Paul Hansen; Nalini Singh; Ursula Theuretzbacher; Nicola Magrini
Journal:  Lancet Infect Dis       Date:  2017-12-21       Impact factor: 71.421

5.  Large-scale contamination of microbial isolate genomes by Illumina PhiX control.

Authors:  Supratim Mukherjee; Marcel Huntemann; Natalia Ivanova; Nikos C Kyrpides; Amrita Pati
Journal:  Stand Genomic Sci       Date:  2015-03-30

6.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

7.  Fusobacterium Genomics Using MinION and Illumina Sequencing Enables Genome Completion and Correction.

Authors:  S Michelle Todd; Robert E Settlage; Kevin K Lahmers; Daniel J Slade
Journal:  mSphere       Date:  2018-07-05       Impact factor: 4.389

8.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

9.  RefSeq: an update on prokaryotic genome annotation and curation.

Authors:  Daniel H Haft; Michael DiCuccio; Azat Badretdin; Vyacheslav Brover; Vyacheslav Chetvernin; Kathleen O'Neill; Wenjun Li; Farideh Chitsaz; Myra K Derbyshire; Noreen R Gonzales; Marc Gwadz; Fu Lu; Gabriele H Marchler; James S Song; Narmada Thanki; Roxanne A Yamashita; Chanjuan Zheng; Françoise Thibaud-Nissen; Lewis Y Geer; Aron Marchler-Bauer; Kim D Pruitt
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971
  9 in total
  2 in total

1.  Acinetobacter baumannii Regulates Its Stress Responses via the BfmRS Two-Component Regulatory System.

Authors:  Samantha Palethorpe; John M Farrow; Greg Wells; Morgan E Milton; Luis A Actis; John Cavanagh; Everett C Pesci
Journal:  J Bacteriol       Date:  2021-12-06       Impact factor: 3.476

2.  Novel Phage Lysin Abp013 against Acinetobacter baumannii.

Authors:  Joash Jun Keat Chu; Wee Han Poh; Nabilah Taqiah Binte Hasnuddin; En Yi Hew; Linh Chi Dam; Abbas El Sahili; Scott A Rice; Boon Chong Goh
Journal:  Antibiotics (Basel)       Date:  2022-01-28
  2 in total

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