Literature DB >> 33706718

Metagenomic sequencing revealed the potential of banknotes as a repository of microbial genes.

Jun Lin1,2,3,4, Wenqian Jiang1,3, Lin Chen1,3, Huilian Zhang1,3, Yang Shi1,3, Xin Liu1,3, Weiwen Cai5,6.   

Abstract

BACKGROUND: Genetic resources are important natural assets. Discovery of new enzyme gene sequences has been an ongoing effort in biotechnology industry. In the genomic age, genomes of microorganisms from various environments have been deciphered. Increasingly, it has become more and more difficult to find novel enzyme genes. In this work, we attempted to use the easily accessible banknotes to search for novel microbial gene sequences.
RESULTS: We used high-throughput genomic sequencing technology to comprehensively characterize the diversity of microorganisms on the US dollars and Chinese Renminbis (RMBs). In addition to finding a vast diversity of microbes, we found a significant number of novel gene sequences, including an unreported superoxide dismutase (SOD) gene, whose catalytic activity was further verified by experiments.
CONCLUSIONS: We demonstrated that banknotes could be a good and convenient genetic resource for finding economically valuable biologicals.

Entities:  

Keywords:  Banknote microbial diversity; Metagenomic sequencing; Microbial gene variants; Superoxide dismutase gene

Mesh:

Year:  2021        PMID: 33706718      PMCID: PMC7953773          DOI: 10.1186/s12864-021-07424-5

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


  17 in total

Review 1.  Nonribosomal peptide synthetases: structures and dynamics.

Authors:  Matthias Strieker; Alan Tanović; Mohamed A Marahiel
Journal:  Curr Opin Struct Biol       Date:  2010-02-10       Impact factor: 6.809

2.  Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity.

Authors:  Zachary Charlop-Powers; Clara C Pregitzer; Christophe Lemetre; Melinda A Ternei; Jeffrey Maniko; Bradley M Hover; Paula Y Calle; Krista L McGuire; Jeanne Garbarino; Helen M Forgione; Sarah Charlop-Powers; Sean F Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-28       Impact factor: 11.205

3.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

4.  Superoxide dismutase. An enzymic function for erythrocuprein (hemocuprein).

Authors:  J M McCord; I Fridovich
Journal:  J Biol Chem       Date:  1969-11-25       Impact factor: 5.157

5.  Dirty money.

Authors:  B L Abrams; N G Waterman
Journal:  JAMA       Date:  1972-02-28       Impact factor: 56.272

Review 6.  New extremophilic lipases and esterases from metagenomics.

Authors:  Olalla López-López; Maria E Cerdán; Maria I González Siso
Journal:  Curr Protein Pept Sci       Date:  2014       Impact factor: 3.272

Review 7.  Superoxide dismutases-a review of the metal-associated mechanistic variations.

Authors:  Isabel A Abreu; Diane E Cabelli
Journal:  Biochim Biophys Acta       Date:  2009-11-13

8.  Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes.

Authors:  Yoshitaro Heshiki; Thrimendra Dissanayake; Tingting Zheng; Kang Kang; Ni Yueqiong; Zeling Xu; Chinmoy Sarkar; Patrick C Y Woo; Billy K C Chow; David Baker; Aixin Yan; Christopher J Webster; Gianni Panagiotou; Jun Li
Journal:  Front Microbiol       Date:  2017-04-13       Impact factor: 5.640

9.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

10.  The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.

Authors:  Brandi L Cantarel; Pedro M Coutinho; Corinne Rancurel; Thomas Bernard; Vincent Lombard; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2008-10-05       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.