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Literature DB >> 33705383

Ten simple rules for quick and dirty scientific programming.

Gabriel Balaban^1,2, Ivar Grytten¹, Knut Dagestad Rand³, Lonneke Scheffer¹, Geir Kjetil Sandve^1,2.

Abstract

Entities: Disease Species

Year: 2021 PMID： 33705383 PMCID： PMC7951887 DOI： 10.1371/journal.pcbi.1008549

Source DB: PubMed Journal: PLoS Comput Biol ISSN： 1553-734X Impact factor: 4.475

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14 in total

1. Scientific publishing. A scientist's nightmare: software problem leads to five retractions.

Authors: Greg Miller
Journal: Science Date: 2006-12-22 Impact factor: 47.728

2. Ten simple rules for making research software more robust.

Authors: Morgan Taschuk; Greg Wilson
Journal: PLoS Comput Biol Date: 2017-04-13 Impact factor: 4.475

3. Nextflow enables reproducible computational workflows.

Authors: Paolo Di Tommaso; Maria Chatzou; Evan W Floden; Pablo Prieto Barja; Emilio Palumbo; Cedric Notredame
Journal: Nat Biotechnol Date: 2017-04-11 Impact factor: 54.908

4. Galaxy: a web-based genome analysis tool for experimentalists.

Authors: Daniel Blankenberg; Gregory Von Kuster; Nathaniel Coraor; Guruprasad Ananda; Ross Lazarus; Mary Mangan; Anton Nekrutenko; James Taylor
Journal: Curr Protoc Mol Biol Date: 2010-01

5. Ten simple rules for the open development of scientific software.

Authors: Andreas Prlić; James B Procter
Journal: PLoS Comput Biol Date: 2012-12-06 Impact factor: 4.475

6. Ten simple rules for effective computational research.

Authors: James M Osborne; Miguel O Bernabeu; Maria Bruna; Ben Calderhead; Jonathan Cooper; Neil Dalchau; Sara-Jane Dunn; Alexander G Fletcher; Robin Freeman; Derek Groen; Bernhard Knapp; Greg J McInerny; Gary R Mirams; Joe Pitt-Francis; Biswa Sengupta; David W Wright; Christian A Yates; David J Gavaghan; Stephen Emmott; Charlotte Deane
Journal: PLoS Comput Biol Date: 2014-03-27 Impact factor: 4.475

7. Best practices for scientific computing.

Authors: Greg Wilson; D A Aruliah; C Titus Brown; Neil P Chue Hong; Matt Davis; Richard T Guy; Steven H D Haddock; Kathryn D Huff; Ian M Mitchell; Mark D Plumbley; Ben Waugh; Ethan P White; Paul Wilson
Journal: PLoS Biol Date: 2014-01-07 Impact factor: 8.029

Ten simple rules for quick and dirty scientific programming.

1. Scientific publishing. A scientist's nightmare: software problem leads to five retractions.

2. Ten simple rules for making research software more robust.

3. Nextflow enables reproducible computational workflows.

4. Galaxy: a web-based genome analysis tool for experimentalists.

5. Ten simple rules for the open development of scientific software.

6. Ten simple rules for effective computational research.

7. Best practices for scientific computing.

8. Ten Simple Rules for Developing Usable Software in Computational Biology.

9. Ten simple rules for biologists learning to program.

10. Good enough practices in scientific computing.

1. Ten simple rules on writing clean and reliable open-source scientific software.

2. Ten simple rules for teaching yourself R.