Literature DB >> 33692493

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome.

Robert Moore1, Bhanwar Lal Puniya1, Robert Powers2, Chittibabu Guda3, Kenneth W Bayles4, David B Berkowitz2, Tomáš Helikar5.   

Abstract

Recent political unrest has highlighted the importance of understanding the short- and long-term effects of gamma-radiation exposure on human health and survivability. In this regard, effective treatment for acute radiation syndrome (ARS) is a necessity in cases of nuclear disasters. Here, we propose 20 therapeutic targets for ARS identified using a systematic approach that integrates gene coexpression networks obtained under radiation treatment in humans and mice, drug databases, disease-gene association, radiation-induced differential gene expression, and literature mining. By selecting gene targets with existing drugs, we identified potential candidates for drug repurposing. Eight of these genes (BRD4, NFKBIA, CDKN1A, TFPI, MMP9, CBR1, ZAP70, IDH3B) were confirmed through literature to have shown radioprotective effect upon perturbation. This study provided a new perspective for the treatment of ARS using systems-level gene associations integrated with multiple biological information. The identified genes might provide high confidence drug target candidates for potential drug repurposing for ARS.

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Year:  2021        PMID: 33692493      PMCID: PMC7946886          DOI: 10.1038/s41598-021-85044-5

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  56 in total

1.  Radiation-Induced Long Noncoding RNAs in a Mouse Model after Whole-Body Irradiation.

Authors:  Molykutty J Aryankalayil; Sunita Chopra; Joel Levin; Iris Eke; Adeola Makinde; Shaoli Das; Uma Shankavaram; Claire Vanpouille-Box; Sandra Demaria; C Norman Coleman
Journal:  Radiat Res       Date:  2018-01-08       Impact factor: 2.841

2.  limma powers differential expression analyses for RNA-sequencing and microarray studies.

Authors:  Matthew E Ritchie; Belinda Phipson; Di Wu; Yifang Hu; Charity W Law; Wei Shi; Gordon K Smyth
Journal:  Nucleic Acids Res       Date:  2015-01-20       Impact factor: 16.971

3.  A Review of Radiation-Induced Coagulopathy and New Findings to Support Potential Prevention Strategies and Treatments.

Authors:  Ann R Kennedy; Amit Maity; Jenine K Sanzari
Journal:  Radiat Res       Date:  2016-07-26       Impact factor: 2.841

4.  Gene expression profiling of biological pathway alterations by radiation exposure.

Authors:  Kuei-Fang Lee; Julia Tzu-Ya Weng; Paul Wei-Che Hsu; Yu-Hsiang Chi; Ching-Kai Chen; Ingrid Y Liu; Yi-Cheng Chen; Lawrence Shih-Hsin Wu
Journal:  Biomed Res Int       Date:  2014-09-08       Impact factor: 3.411

5.  Drug Repositioning through Systematic Mining of Gene Coexpression Networks in Cancer.

Authors:  Alexander E Ivliev; Peter A C 't Hoen; Dmitrii Borisevich; Yuri Nikolsky; Marina G Sergeeva
Journal:  PLoS One       Date:  2016-11-08       Impact factor: 3.240

6.  Application of Weighted Gene Co-Expression Network Analysis to Explore the Key Genes in Alzheimer's Disease.

Authors:  Jia-Wei Liang; Zheng-Yu Fang; Yong Huang; Zhen-Yu Liuyang; Xiao-Lin Zhang; Jing-Lin Wang; Hui Wei; Jian-Zhi Wang; Xiao-Chuan Wang; Ji Zeng; Rong Liu
Journal:  J Alzheimers Dis       Date:  2018       Impact factor: 4.472

7.  Radiosensitization by combining an aurora kinase inhibitor with radiotherapy in hepatocellular carcinoma through cell cycle interruption.

Authors:  Zhong-Zhe Lin; Chia-Hung Chou; Ann-Lii Cheng; Wei-Lin Liu; Jason Chia-Hsien Cheng
Journal:  Int J Cancer       Date:  2014-01-10       Impact factor: 7.396

8.  WGCNA: an R package for weighted correlation network analysis.

Authors:  Peter Langfelder; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2008-12-29       Impact factor: 3.169

Review 9.  Annexin A2: its molecular regulation and cellular expression in cancer development.

Authors:  Chi-Yun Wang; Chiou-Feng Lin
Journal:  Dis Markers       Date:  2014-01-23       Impact factor: 3.434

10.  The thrombopoietin mimetic romiplostim leads to the complete rescue of mice exposed to lethal ionizing radiation.

Authors:  Masaru Yamaguchi; Tokuhisa Hirouchi; Koki Yokoyama; Ayaka Nishiyama; Sho Murakami; Ikuo Kashiwakura
Journal:  Sci Rep       Date:  2018-07-13       Impact factor: 4.379

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