Literature DB >> 33690626

Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics.

Pieter J K Libin1,2,3, Lander Willem4, Timothy Verstraeten2, Andrea Torneri1,4, Joris Vanderlocht1, Niel Hens1,4.   

Abstract

Outbreaks of SARS-CoV-2 are threatening the health care systems of several countries around the world. The initial control of SARS-CoV-2 epidemics relied on non-pharmaceutical interventions, such as social distancing, teleworking, mouth masks and contact tracing. However, as pre-symptomatic transmission remains an important driver of the epidemic, contact tracing efforts struggle to fully control SARS-CoV-2 epidemics. Therefore, in this work, we investigate to what extent the use of universal testing, i.e., an approach in which we screen the entire population, can be utilized to mitigate this epidemic. To this end, we rely on PCR test pooling of individuals that belong to the same households, to allow for a universal testing procedure that is feasible with the limited testing capacity. We evaluate two isolation strategies: on the one hand pool isolation, where we isolate all individuals that belong to a positive PCR test pool, and on the other hand individual isolation, where we determine which of the individuals that belong to the positive PCR pool are positive, through an additional testing step. We evaluate this universal testing approach in the STRIDE individual-based epidemiological model in the context of the Belgian COVID-19 epidemic. As the organisation of universal testing will be challenging, we discuss the different aspects related to sample extraction and PCR testing, to demonstrate the feasibility of universal testing when a decentralized testing approach is used. We show through simulation, that weekly universal testing is able to control the epidemic, even when many of the contact reductions are relieved. Finally, our model shows that the use of universal testing in combination with stringent contact reductions could be considered as a strategy to eradicate the virus.

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Mesh:

Year:  2021        PMID: 33690626     DOI: 10.1371/journal.pcbi.1008688

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  9 in total

1.  Controlling SARS-CoV-2 in schools using repetitive testing strategies.

Authors:  Niel Hens; Pieter J K Libin; Andrea Torneri; Lander Willem; Vittoria Colizza; Cécile Kremer; Christelle Meuris; Gilles Darcis
Journal:  Elife       Date:  2022-07-05       Impact factor: 8.713

2.  Perception of COVID-19 Testing in the Entire Population.

Authors:  Beata Gavurova; Viera Ivankova; Martin Rigelsky; Zdenek Caha; Tawfik Mudarri
Journal:  Front Public Health       Date:  2022-02-10

3.  A hybrid stochastic model and its Bayesian identification for infectious disease screening in a university campus with application to massive COVID-19 screening at the University of Liège.

Authors:  M Arnst; G Louppe; R Van Hulle; L Gillet; F Bureau; V Denoël
Journal:  Math Biosci       Date:  2022-03-16       Impact factor: 3.935

4.  Smart pooling: AI-powered COVID-19 informative group testing.

Authors:  María Escobar; Guillaume Jeanneret; Laura Bravo-Sánchez; Angela Castillo; Catalina Gómez; Diego Valderrama; Mafe Roa; Julián Martínez; Jorge Madrid-Wolff; Martha Cepeda; Marcela Guevara-Suarez; Olga L Sarmiento; Andrés L Medaglia; Manu Forero-Shelton; Mauricio Velasco; Juan M Pedraza; Rachid Laajaj; Silvia Restrepo; Pablo Arbelaez
Journal:  Sci Rep       Date:  2022-04-20       Impact factor: 4.996

5.  Pooled testing of traced contacts under superspreading dynamics.

Authors:  Stratis Tsirtsis; Abir De; Lars Lorch; Manuel Gomez-Rodriguez
Journal:  PLoS Comput Biol       Date:  2022-03-28       Impact factor: 4.475

Review 6.  A Tale of Three Recent Pandemics: Influenza, HIV and SARS-CoV-2.

Authors:  Mafalda N S Miranda; Marta Pingarilho; Victor Pimentel; Andrea Torneri; Sofia G Seabra; Pieter J K Libin; Ana B Abecasis
Journal:  Front Microbiol       Date:  2022-06-02       Impact factor: 6.064

7.  Different forms of superspreading lead to different outcomes: Heterogeneity in infectiousness and contact behavior relevant for the case of SARS-CoV-2.

Authors:  Elise J Kuylen; Andrea Torneri; Lander Willem; Pieter J K Libin; Steven Abrams; Pietro Coletti; Nicolas Franco; Frederik Verelst; Philippe Beutels; Jori Liesenborgs; Niel Hens
Journal:  PLoS Comput Biol       Date:  2022-08-22       Impact factor: 4.779

8.  Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients.

Authors:  Bart Van Puyvelde; Katleen Van Uytfanghe; Olivier Tytgat; Laurence Van Oudenhove; Ralf Gabriels; Robbin Bouwmeester; Simon Daled; Tim Van Den Bossche; Pathmanaban Ramasamy; Sigrid Verhelst; Laura De Clerck; Laura Corveleyn; Sander Willems; Nathan Debunne; Evelien Wynendaele; Bart De Spiegeleer; Peter Judak; Kris Roels; Laurie De Wilde; Peter Van Eenoo; Tim Reyns; Marc Cherlet; Emmie Dumont; Griet Debyser; Ruben t'Kindt; Koen Sandra; Surya Gupta; Nicolas Drouin; Amy Harms; Thomas Hankemeier; Donald J L Jones; Pankaj Gupta; Dan Lane; Catherine S Lane; Said El Ouadi; Jean-Baptiste Vincendet; Nick Morrice; Stuart Oehrle; Nikunj Tanna; Steve Silvester; Sally Hannam; Florian C Sigloch; Andrea Bhangu-Uhlmann; Jan Claereboudt; N Leigh Anderson; Morteza Razavi; Sven Degroeve; Lize Cuypers; Christophe Stove; Katrien Lagrou; Geert A Martens; Dieter Deforce; Lennart Martens; Johannes P C Vissers; Maarten Dhaenens
Journal:  JACS Au       Date:  2021-05-03

Review 9.  Recent findings and applications of biomedical engineering for COVID-19 diagnosis: a critical review.

Authors:  Le Minh Bui; Huong Thi Thu Phung; Thuy-Tien Ho Thi; Vijai Singh; Rupesh Maurya; Khushal Khambhati; Chia-Ching Wu; Md Jamal Uddin; Do Minh Trung; Dinh Toi Chu
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

  9 in total

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