Literature DB >> 33689070

Novel Negative Sense Genes in the RNA Genome of Coronaviruses.

O P Zhirnov1,2, S V Poyarkov3.   

Abstract

The coronavirus family consists of lipid-containing envelope viruses that have a single-stranded RNA genome that encodes 25-30 proteins in different viruses by the mechanism of positive-polarity strategy. In addition, extended open reading trnslation frames (ORFs, genes) located in a negative-sense orientation were found in the genomes of coronaviruses. The size of negative-sense genes varies in the range of 150-450 nt, which corresponds to polypeptides encoded by negative-polarity genes (negative gene proteins, NGP) with m. m. 5-30 × 103 kDa. Coronaviruses show marked differences from virus to virus in the number of negative genes detected. These negative-sense genes in the coronavirus genome allow this family to be considered as viruses developing an ambisense genome strategy.

Entities:  

Keywords:  ambisense genes; coronaviruses; genome; genome polarity

Year:  2021        PMID: 33689070     DOI: 10.1134/S1607672921010130

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


  10 in total

1.  Negative-sense virion RNA of segment 8 (NS) of influenza a virus is able to translate in vitro a new viral protein.

Authors:  O P Zhirnov; K A Akulich; A V Lipatova; E V Usachev
Journal:  Dokl Biochem Biophys       Date:  2017-05-17       Impact factor: 0.788

2.  Influenza A Virus Negative Strand RNA Is Translated for CD8+ T Cell Immunosurveillance.

Authors:  Heather D Hickman; Jacqueline W Mays; James Gibbs; Ivan Kosik; Javier G Magadán; Kazuyo Takeda; Suman Das; Glennys V Reynoso; Barbara F Ngudiankama; JiaJie Wei; John P Shannon; Daniel McManus; Jonathan W Yewdell
Journal:  J Immunol       Date:  2018-07-16       Impact factor: 5.422

3.  Structural and evolutionary characteristics of HA, NA, NS and M genes of clinical influenza A/H3N2 viruses passaged in human and canine cells.

Authors:  O P Zhirnov; I V Vorobjeva; O A Saphonova; S V Poyarkov; A V Ovcharenko; D Anhlan; N A Malyshev
Journal:  J Clin Virol       Date:  2009-08       Impact factor: 3.168

Review 4.  Coronaviruses: an overview of their replication and pathogenesis.

Authors:  Anthony R Fehr; Stanley Perlman
Journal:  Methods Mol Biol       Date:  2015

5.  Computational analysis and mapping of novel open reading frames in influenza A viruses.

Authors:  Yu-Nong Gong; Guang-Wu Chen; Chi-Jene Chen; Rei-Lin Kuo; Shin-Ru Shih
Journal:  PLoS One       Date:  2014-12-15       Impact factor: 3.240

Review 6.  Non-AUG translation: a new start for protein synthesis in eukaryotes.

Authors:  Michael G Kearse; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2017-09-01       Impact factor: 11.361

7.  Unique Bipolar Gene Architecture in the RNA Genome of Influenza A Virus.

Authors:  O P Zhirnov
Journal:  Biochemistry (Mosc)       Date:  2020-03       Impact factor: 2.487

Review 8.  The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak - an update on the status.

Authors:  Yan-Rong Guo; Qing-Dong Cao; Zhong-Si Hong; Yuan-Yang Tan; Shou-Deng Chen; Hong-Jun Jin; Kai-Sen Tan; De-Yun Wang; Yan Yan
Journal:  Mil Med Res       Date:  2020-03-13

9.  A new coronavirus associated with human respiratory disease in China.

Authors:  Fan Wu; Su Zhao; Bin Yu; Yan-Mei Chen; Wen Wang; Zhi-Gang Song; Yi Hu; Zhao-Wu Tao; Jun-Hua Tian; Yuan-Yuan Pei; Ming-Li Yuan; Yu-Ling Zhang; Fa-Hui Dai; Yi Liu; Qi-Min Wang; Jiao-Jiao Zheng; Lin Xu; Edward C Holmes; Yong-Zhen Zhang
Journal:  Nature       Date:  2020-02-03       Impact factor: 49.962

10.  IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES).

Authors:  Pandurang Kolekar; Abhijeet Pataskar; Urmila Kulkarni-Kale; Jayanta Pal; Abhijeet Kulkarni
Journal:  Sci Rep       Date:  2016-06-06       Impact factor: 4.379

  10 in total

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