Literature DB >> 33688608

Combining network topology and information theory to construct representative brain networks.

Andrea I Luppi1, Emmanuel A Stamatakis1.   

Abstract

Network neuroscience employs graph theory to investigate the human brain as a complex network, and derive generalizable insights about the brain's network properties. However, graph-theoretical results obtained from network construction pipelines that produce idiosyncratic networks may not generalize when alternative pipelines are employed. This issue is especially pressing because a wide variety of network construction pipelines have been employed in the human network neuroscience literature, making comparisons between studies problematic. Here, we investigate how to produce networks that are maximally representative of the broader set of brain networks obtained from the same neuroimaging data. We do so by minimizing an information-theoretic measure of divergence between network topologies, known as the portrait divergence. Based on functional and diffusion MRI data from the Human Connectome Project, we consider anatomical, functional, and multimodal parcellations at three different scales, and 48 distinct ways of defining network edges. We show that the highest representativeness can be obtained by using parcellations in the order of 200 regions and filtering functional networks based on efficiency-cost optimization-though suitable alternatives are also highlighted. Overall, we identify specific node definition and thresholding procedures that neuroscientists can follow in order to derive representative networks from their human neuroimaging data.
© 2020 Massachusetts Institute of Technology.

Entities:  

Keywords:  Functional connectivity; Graph theory; Parcellation; Representativeness; Structural connectivity; Thresholding

Year:  2021        PMID: 33688608      PMCID: PMC7935031          DOI: 10.1162/netn_a_00170

Source DB:  PubMed          Journal:  Netw Neurosci        ISSN: 2472-1751


  55 in total

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3.  Test-retest reliability of resting-state connectivity network characteristics using fMRI and graph theoretical measures.

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Journal:  Neuroimage       Date:  2011-08-23       Impact factor: 6.556

Review 4.  Imaging-based parcellations of the human brain.

Authors:  Simon B Eickhoff; B T Thomas Yeo; Sarah Genon
Journal:  Nat Rev Neurosci       Date:  2018-11       Impact factor: 34.870

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Authors:  Eirini Messaritaki; Stavros I Dimitriadis; Derek K Jones
Journal:  Neuroimage       Date:  2019-06-06       Impact factor: 6.556

6.  Population-averaged atlas of the macroscale human structural connectome and its network topology.

Authors:  Fang-Cheng Yeh; Sandip Panesar; David Fernandes; Antonio Meola; Masanori Yoshino; Juan C Fernandez-Miranda; Jean M Vettel; Timothy Verstynen
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7.  Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey.

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Journal:  J Neurosci       Date:  2016-06-22       Impact factor: 6.167

8.  A multi-modal parcellation of human cerebral cortex.

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Journal:  Nature       Date:  2016-07-20       Impact factor: 49.962

Review 9.  Imaging human connectomes at the macroscale.

Authors:  R Cameron Craddock; Saad Jbabdi; Chao-Gan Yan; Joshua T Vogelstein; F Xavier Castellanos; Adriana Di Martino; Clare Kelly; Keith Heberlein; Stan Colcombe; Michael P Milham
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Authors:  Bolin Cao; Yan Chen; Ronghao Yu; Lixiang Chen; Ping Chen; Yihe Weng; Qinyuan Chen; Jie Song; Qiuyou Xie; Ruiwang Huang
Journal:  Neuroimage Clin       Date:  2019-11-05       Impact factor: 4.881

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4.  Brain network integration dynamics are associated with loss and recovery of consciousness induced by sevoflurane.

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5.  Cognition Without Neural Representation: Dynamics of a Complex System.

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Journal:  Front Psychol       Date:  2022-01-12

6.  Reproducibility of graph measures derived from resting-state MEG functional connectivity metrics in sensor and source spaces.

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7.  Whole-brain modelling identifies distinct but convergent paths to unconsciousness in anaesthesia and disorders of consciousness.

Authors:  Andrea I Luppi; Pedro A M Mediano; Fernando E Rosas; Judith Allanson; John D Pickard; Guy B Williams; Michael M Craig; Paola Finoia; Alexander R D Peattie; Peter Coppola; Adrian M Owen; Lorina Naci; David K Menon; Daniel Bor; Emmanuel A Stamatakis
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Authors:  S Parker Singleton; Andrea I Luppi; Robin L Carhart-Harris; Josephine Cruzat; Leor Roseman; David J Nutt; Gustavo Deco; Morten L Kringelbach; Emmanuel A Stamatakis; Amy Kuceyeski
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10.  Preserved fractal character of structural brain networks is associated with covert consciousness after severe brain injury.

Authors:  Andrea I Luppi; Michael M Craig; Peter Coppola; Alexander R D Peattie; Paola Finoia; Guy B Williams; Judith Allanson; John D Pickard; David K Menon; Emmanuel A Stamatakis
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  10 in total

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