Literature DB >> 33687840

Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value.

Iman Aganj, Bruce Fischl.   

Abstract

The use of multiple atlases is common in medical image segmentation. This typically requires deformable registration of the atlases (or the average atlas) to the new image, which is computationally expensive and susceptible to entrapment in local optima. We propose to instead consider the probability of all possible atlas-to-image transformations and compute the expected label value (ELV), thereby not relying merely on the transformation deemed "optimal" by the registration method. Moreover, we do so without actually performing deformable registration, thus avoiding the associated computational costs. We evaluate our ELV computation approach by applying it to brain, liver, and pancreas segmentation on datasets of magnetic resonance and computed tomography images.

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Mesh:

Year:  2021        PMID: 33687840      PMCID: PMC8202781          DOI: 10.1109/TMI.2021.3064661

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  21 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

2.  Deformable image registration by combining uncertainty estimates from supervoxel belief propagation.

Authors:  Mattias P Heinrich; Ivor J A Simpson; BartŁomiej W Papież; Sir Michael Brady; Julia A Schnabel
Journal:  Med Image Anal       Date:  2015-10-19       Impact factor: 8.545

3.  Multi-atlas based segmentation of brain images: atlas selection and its effect on accuracy.

Authors:  P Aljabar; R A Heckemann; A Hammers; J V Hajnal; D Rueckert
Journal:  Neuroimage       Date:  2009-02-23       Impact factor: 6.556

Review 4.  A review of atlas-based segmentation for magnetic resonance brain images.

Authors:  Mariano Cabezas; Arnau Oliver; Xavier Lladó; Jordi Freixenet; Meritxell Bach Cuadra
Journal:  Comput Methods Programs Biomed       Date:  2011-08-25       Impact factor: 5.428

Review 5.  A survey on deep learning in medical image analysis.

Authors:  Geert Litjens; Thijs Kooi; Babak Ehteshami Bejnordi; Arnaud Arindra Adiyoso Setio; Francesco Ciompi; Mohsen Ghafoorian; Jeroen A W M van der Laak; Bram van Ginneken; Clara I Sánchez
Journal:  Med Image Anal       Date:  2017-07-26       Impact factor: 8.545

6.  Spatial aggregation of holistically-nested convolutional neural networks for automated pancreas localization and segmentation.

Authors:  Holger R Roth; Le Lu; Nathan Lay; Adam P Harrison; Amal Farag; Andrew Sohn; Ronald M Summers
Journal:  Med Image Anal       Date:  2018-02-01       Impact factor: 8.545

7.  Image similarity and tissue overlaps as surrogates for image registration accuracy: widely used but unreliable.

Authors:  Torsten Rohlfing
Journal:  IEEE Trans Med Imaging       Date:  2011-08-08       Impact factor: 10.048

8.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

9.  An algorithm for optimal fusion of atlases with different labeling protocols.

Authors:  Juan Eugenio Iglesias; Mert Rory Sabuncu; Iman Aganj; Priyanka Bhatt; Christen Casillas; David Salat; Adam Boxer; Bruce Fischl; Koen Van Leemput
Journal:  Neuroimage       Date:  2014-11-22       Impact factor: 6.556

10.  Implementation and Validation of a Three-dimensional Cardiac Motion Estimation Network.

Authors:  Manuel A Morales; David Izquierdo-Garcia; Iman Aganj; Jayashree Kalpathy-Cramer; Bruce R Rosen; Ciprian Catana
Journal:  Radiol Artif Intell       Date:  2019-07-17
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