Literature DB >> 33687724

The jPOST Repository as a Public Data Repository for Shotgun Proteomics.

Yu Watanabe1, Akiyasu C Yoshizawa2, Yasushi Ishihama2, Shujiro Okuda3.   

Abstract

In recent years, mass spectrometry-based proteomics approach has made significant progress and the number of datasets related to various proteomics projects has increased worldwide. To promote the sharing and reuse of promising datasets, it is important to build an appropriate, high-quality public data repository. For this purpose, several repositories have already been created. The jPOST repository that we developed in 2016 has successfully implemented several unique features, such as fast file upload, flexible file management, and an easy-to-use interface. In addition, this repository is an official member of the ProteomeXchange Consortium established to facilitate standard data submission and global dissemination of mass spectrometry proteomics data. Our repository contributes to the global partnership for sharing and storing all the datasets related to various proteomics experiments.

Keywords:  Database; Mass spectrometry; ProteomeXchange Consortium; Proteomics; Repository

Mesh:

Substances:

Year:  2021        PMID: 33687724     DOI: 10.1007/978-1-0716-1178-4_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach.

Authors:  Karla Cervantes-Gracia; Richard Chahwan; Holger Husi
Journal:  Front Genet       Date:  2022-02-04       Impact factor: 4.599

Review 2.  A proteomics sample metadata representation for multiomics integration and big data analysis.

Authors:  Chengxin Dai; Anja Füllgrabe; Julianus Pfeuffer; Elizaveta M Solovyeva; Jingwen Deng; Pablo Moreno; Selvakumar Kamatchinathan; Deepti Jaiswal Kundu; Nancy George; Silvie Fexova; Björn Grüning; Melanie Christine Föll; Johannes Griss; Marc Vaudel; Enrique Audain; Marie Locard-Paulet; Michael Turewicz; Martin Eisenacher; Julian Uszkoreit; Tim Van Den Bossche; Veit Schwämmle; Henry Webel; Stefan Schulze; David Bouyssié; Savita Jayaram; Vinay Kumar Duggineni; Patroklos Samaras; Mathias Wilhelm; Meena Choi; Mingxun Wang; Oliver Kohlbacher; Alvis Brazma; Irene Papatheodorou; Nuno Bandeira; Eric W Deutsch; Juan Antonio Vizcaíno; Mingze Bai; Timo Sachsenberg; Lev I Levitsky; Yasset Perez-Riverol
Journal:  Nat Commun       Date:  2021-10-06       Impact factor: 14.919

3.  ppx: Programmatic Access to Proteomics Data Repositories.

Authors:  William E Fondrie; Wout Bittremieux; William S Noble
Journal:  J Proteome Res       Date:  2021-08-03       Impact factor: 5.370

4.  Development of RIKEN Plant Metabolome MetaDatabase.

Authors:  Atsushi Fukushima; Mikiko Takahashi; Hideki Nagasaki; Yusuke Aono; Makoto Kobayashi; Miyako Kusano; Kazuki Saito; Norio Kobayashi; Masanori Arita
Journal:  Plant Cell Physiol       Date:  2022-03-11       Impact factor: 4.927

5.  Transcriptome features of striated muscle aging and predictability of protein level changes.

Authors:  Yu Han; Lauren Z Li; Nikhitha L Kastury; Cody T Thomas; Maggie P Y Lam; Edward Lau
Journal:  Mol Omics       Date:  2021-10-11
  5 in total

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