Literature DB >> 33686958

Identification of key genes in coronary artery disease: an integrative approach based on weighted gene co-expression network analysis and their correlation with immune infiltration.

Yang Yang1, Xiangshan Xu1.   

Abstract

This study aimed to identify key genes related to coronary artery disease (CAD) and its association with immune cells infiltration. GSE20680 and GSE20681 were downloaded from GEO. We identified red and pink modules in WGCNA analysis and found 104 genes in these two modules. Next, least absolute shrinkage and selection operator (LASSO) logistic regression was used to screen and verify the diagnostic markers of CAD. We identified ASCC2, LRRC18, and SLC25A37 as the key genes in CAD diagnosis. We further studied the immune cells infiltration in CAD patients with CIBERSORT, and the correlation between key genes and infiltrating immune cells was analyzed. We also found immune cells, including macrophages M0, mast cells resting and T cells CD8, were associated with ASCC2, LRRC18 and SLC25A37. Gene enrichment analysis indicated that these genes mainly enriched in apoptotic signaling pathway for biological pathway analysis, riboflavin metabolism for KEGG analysis. The diagnostic efficiency of these key genes measured by AUC in the training set, testing set and validation cohort was 0.92, 0.96 and 0.83, respectively. In conclusion, ASCC2, LRRC18 and SLC25A37 can be used as diagnostic markers of CAD, and immune cell infiltration plays an important role in the onset and development of CAD.

Entities:  

Keywords:  coronary artery disease; immune cell infiltration; least absolute shrinkage and selection operator; weighted gene co-expression network analysis

Year:  2021        PMID: 33686958     DOI: 10.18632/aging.202638

Source DB:  PubMed          Journal:  Aging (Albany NY)        ISSN: 1945-4589            Impact factor:   5.682


  4 in total

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Authors:  Haijing Wang; Daoxin Liu; Pengfei Song; Feng Jiang; Tongzuo Zhang
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Authors:  Peng-Fei Zheng; Qiong-Chao Zou; Lu-Zhu Chen; Peng Liu; Zheng-Yu Liu; Hong-Wei Pan
Journal:  J Transl Med       Date:  2022-07-21       Impact factor: 8.440

4.  Identification of molecular subtypes of coronary artery disease based on ferroptosis- and necroptosis-related genes.

Authors:  Wen-Pan Liu; Peng Li; Xu Zhan; Lai-Hao Qu; Tao Xiong; Fang-Xia Hou; Jun-Kui Wang; Na Wei; Fu-Qiang Liu
Journal:  Front Genet       Date:  2022-09-20       Impact factor: 4.772

  4 in total

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