Literature DB >> 33684125

A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli.

Alexandre Oliveira1, Joana Rodrigues1, Eugénio Campos Ferreira1, Lígia Rodrigues1, Oscar Dias1.   

Abstract

Acrylic acid is a value-added chemical used in industry to produce diapers, coatings, paints, and adhesives, among many others. Due to its economic importance, there is currently a need for new and sustainable ways to synthesise it. Recently, the focus has been laid in the use of Escherichia coli to express the full bio-based pathway using 3-hydroxypropionate as an intermediary through three distinct pathways (glycerol, malonyl-CoA, and β-alanine). Hence, the goals of this work were to use COPASI software to assess which of the three pathways has a higher potential for industrial-scale production, from either glucose or glycerol, and identify potential targets to improve the biosynthetic pathways yields. When compared to the available literature, the models developed during this work successfully predict the production of 3-hydroxypropionate, using glycerol as carbon source in the glycerol pathway, and using glucose as a carbon source in the malonyl-CoA and β-alanine pathways. Finally, this work allowed to identify four potential over-expression targets (glycerol-3-phosphate dehydrogenase (G3pD), acetyl-CoA carboxylase (AccC), aspartate aminotransferase (AspAT), and aspartate carboxylase (AspC)) that should, theoretically, result in higher AA yields.

Entities:  

Year:  2021        PMID: 33684125      PMCID: PMC7971886          DOI: 10.1371/journal.pcbi.1008704

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  59 in total

1.  COPASI--a COmplex PAthway SImulator.

Authors:  Stefan Hoops; Sven Sahle; Ralph Gauges; Christine Lee; Jürgen Pahle; Natalia Simus; Mudita Singhal; Liang Xu; Pedro Mendes; Ursula Kummer
Journal:  Bioinformatics       Date:  2006-10-10       Impact factor: 6.937

2.  Glutamate-aspartate transaminase from microorganisms.

Authors:  T Yagi; H Kagamiyama; M Nozaki; K Soda
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

3.  Propionyl-coenzyme A synthase from Chloroflexus aurantiacus, a key enzyme of the 3-hydroxypropionate cycle for autotrophic CO2 fixation.

Authors:  Birgit E Alber; Georg Fuchs
Journal:  J Biol Chem       Date:  2002-01-30       Impact factor: 5.157

4.  Biosynthesis in Escherichia coli of sn-glycerol 3-phosphate, a precursor of phospholipid. Kinetic characterization of wild type and feedback-resistant forms of the biosynthetic sn-glycerol-3-phosphate dehydrogenase.

Authors:  J R Edgar; R M Bell
Journal:  J Biol Chem       Date:  1978-09-25       Impact factor: 5.157

5.  The role of the conserved Lys68*:Glu265 intersubunit salt bridge in aspartate aminotransferase kinetics: multiple forced covariant amino acid substitutions in natural variants.

Authors:  Edgar Deu; Keith A Koch; Jack F Kirsch
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

6.  Enhanced production of 3-hydroxypropionic acid from glucose via malonyl-CoA pathway by engineered Escherichia coli.

Authors:  Zhuan Cheng; Jiaqi Jiang; Hui Wu; Zhimin Li; Qin Ye
Journal:  Bioresour Technol       Date:  2015-11-14       Impact factor: 9.642

7.  Optimal 13C-labeling of glycerol carbon source for precise flux estimation in Escherichia coli.

Authors:  Yoshihiro Toya; Shugo Ohashi; Hiroshi Shimizu
Journal:  J Biosci Bioeng       Date:  2017-11-06       Impact factor: 2.894

8.  Production of 3-hydroxypropionic acid from glycerol by recombinant Klebsiella pneumoniae ΔdhaTΔyqhD which can produce vitamin B₁₂ naturally.

Authors:  Somasundar Ashok; Mugesh Sankaranarayanan; Yeounjoo Ko; Kyeung-Eun Jae; Satish Kumar Ainala; Vinod Kumar; Sunghoon Park
Journal:  Biotechnol Bioeng       Date:  2012-10-05       Impact factor: 4.530

9.  eQuilibrator--the biochemical thermodynamics calculator.

Authors:  Avi Flamholz; Elad Noor; Arren Bar-Even; Ron Milo
Journal:  Nucleic Acids Res       Date:  2011-11-07       Impact factor: 16.971

10.  Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli.

Authors:  Pierre Millard; Kieran Smallbone; Pedro Mendes
Journal:  PLoS Comput Biol       Date:  2017-02-10       Impact factor: 4.475

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