Literature DB >> 33683416

Complete Genome Sequence of Cellulomonas sp. JZ18, a Root Endophytic Bacterium Isolated from the Perennial Desert Tussock-Grass Panicum turgidum.

Abdul Aziz Eida1, Salim Bougouffa2,3, Intikhab Alam2, Heribert Hirt4,5, Maged M Saad1.   

Abstract

Cellulomonas sp. JZ18 is a gram-positive, rod shaped bacterium that was previously isolated from the root endosphere of the perennial desert tussock-grass Panicum turgidum. Genome coverage of PacBio sequencing was approximately 199X. Genome assembly generated a single chromosome of 7,421,843 base pairs with a guanine-cytosine (GC) content of 75.60% with 3240 protein coding sequences, 361 pseudo genes, three ribosomal RNA operons, three non-coding RNAs and 45 transfer RNAs. Comparison of JZ18's genome with type strains from the same genus, using digital DNA-DNA hybridization and average nucleotide identity calculations, revealed that JZ18 might potentially belong to a new species. Functional analysis revealed the presence of genes that may complement previously observed biochemical and plant phenotypes. Furthermore, the presence of a number of enzymes could be of potential use in industrial processes as biocatalysts. Genome sequencing and analysis, coupled with comparative genomics, of endophytic bacteria for their potential plant growth promoting activities under different soil conditions will accelerate the knowledge and applications of biostimulants in sustainable agriculture.

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Year:  2021        PMID: 33683416     DOI: 10.1007/s00284-021-02429-5

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  25 in total

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Journal:  Biotechnol Adv       Date:  1997       Impact factor: 14.227

2.  Diversity of bacterial endophytes in roots of Mexican husk tomato plants (Physalis ixocarpa) and their detection in the rhizosphere.

Authors:  H A Marquez-Santacruz; R Hernandez-Leon; M C Orozco-Mosqueda; I Velazquez-Sepulveda; G Santoyo
Journal:  Genet Mol Res       Date:  2010-12-07

3.  Purification and characterization of two sugarcane bagasse-absorbable thermophilic xylanases from the mesophilic Cellulomonas flavigena.

Authors:  Alejandro Santiago-Hernández; Jesús Vega-Estrada; María del Carmen Montes-Horcasitas; María Eugenia Hidalgo-Lara
Journal:  J Ind Microbiol Biotechnol       Date:  2007-01-12       Impact factor: 3.346

4.  Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants.

Authors:  Denise K Zinniel; Pat Lambrecht; N Beth Harris; Zhengyu Feng; Daniel Kuczmarski; Phyllis Higley; Carol A Ishimaru; Alahari Arunakumari; Raúl G Barletta; Anne K Vidaver
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

5.  A bifunctional endoglucanase/endoxylanase from Cellulomonas flavigena with potential use in industrial processes at different pH.

Authors:  Odilia Pérez-Avalos; Leticia M Sánchez-Herrera; Luis M Salgado; Teresa Ponce-Noyola
Journal:  Curr Microbiol       Date:  2008-04-01       Impact factor: 2.188

6.  Purification and characterization of a novel lyase from Cellulomonas sp. that degrades Fusarium and Gibberella acidic polysaccharides.

Authors:  K Takegawa; S Yamaguchi; S Miki; T Jikibara; S Iwahara
Journal:  Agric Biol Chem       Date:  1991-08

7.  KEGG as a reference resource for gene and protein annotation.

Authors:  Minoru Kanehisa; Yoko Sato; Masayuki Kawashima; Miho Furumichi; Mao Tanabe
Journal:  Nucleic Acids Res       Date:  2015-10-17       Impact factor: 16.971

8.  Xylanases of Cellulomonas flavigena: expression, biochemical characterization, and biotechnological potential.

Authors:  Alexander V Lisov; Oksana V Belova; Zoya A Lisova; Nataliy G Vinokurova; Alexey S Nagel; Zhanna I Andreeva-Kovalevskaya; Zhanna I Budarina; Maxim O Nagornykh; Marina V Zakharova; Andrey M Shadrin; Alexander S Solonin; Alexey A Leontievsky
Journal:  AMB Express       Date:  2017-01-03       Impact factor: 3.298

9.  Desert plant bacteria reveal host influence and beneficial plant growth properties.

Authors:  Abdul Aziz Eida; Maren Ziegler; Feras F Lafi; Craig T Michell; Christian R Voolstra; Heribert Hirt; Maged M Saad
Journal:  PLoS One       Date:  2018-12-12       Impact factor: 3.240

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

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  2 in total

1.  Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in Cellulomonas Species.

Authors:  James Li; Ethan D Goddard-Borger; Olanrewaju Raji; Hirak Saxena; Laleh Solhi; Yann Mathieu; Emma R Master; Warren W Wakarchuk; Harry Brumer
Journal:  Appl Environ Microbiol       Date:  2022-07-12       Impact factor: 5.005

2.  Genomic assessment of Stenotrophomonas indicatrix for improved sunflower plant.

Authors:  Bartholomew Saanu Adeleke; Ayansina Segun Ayangbenro; Olubukola Oluranti Babalola
Journal:  Curr Genet       Date:  2021-06-30       Impact factor: 3.886

  2 in total

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