Literature DB >> 33683402

RNA modifications as a common denominator between tRNA and mRNA.

Ofri Levi1, Yoav S Arava2.   

Abstract

Recent studies underscore RNA modifications as a novel mechanism to coordinate expression and function of different genes. While modifications on the sugar or base moieties of tRNA are well known, their roles in mRNA regulation are only starting to emerge. Interestingly, some modifications are present in both tRNA and mRNA, and here we discuss the functional significance of these common features. We describe key modifications that are present in both RNA types, elaborate on proteins that interact with them, and indicate recent works that identify roles in communicating tRNA processes and mRNA regulation. We propose that as tools are developed, the shortlist of features that are common between types of RNA will greatly expand and proteins that interact with them will be identified. In conclusion, the presence of the same modification in both RNA types provides an intersect between tRNA processes and mRNA regulation and implies a novel mechanism for connecting diverse cellular processes.

Entities:  

Keywords:  Inosine; Pseudouridine; RNA binding proteins; RNA modifications; Translation; m5C; m6A; mRNA; tRNA

Year:  2021        PMID: 33683402     DOI: 10.1007/s00294-021-01168-1

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  36 in total

1.  Nucleotide modifications and tRNA anticodon-mRNA codon interactions on the ribosome.

Authors:  Olof Allnér; Lennart Nilsson
Journal:  RNA       Date:  2011-10-25       Impact factor: 4.942

2.  Genome-wide identification of mRNA 5-methylcytosine in mammals.

Authors:  Tao Huang; Wanying Chen; Jianheng Liu; Nannan Gu; Rui Zhang
Journal:  Nat Struct Mol Biol       Date:  2019-05-06       Impact factor: 15.369

3.  Cytosine methylation by DNMT2 facilitates stability and survival of HIV-1 RNA in the host cell during infection.

Authors:  Rachana Roshan Dev; Rakesh Ganji; Satya Prakash Singh; Sundarasamy Mahalingam; Sharmistha Banerjee; Sanjeev Khosla
Journal:  Biochem J       Date:  2017-06-06       Impact factor: 3.857

4.  Chemical tagging for sensitive determination of uridine modifications in RNA.

Authors:  Qing-Yun Cheng; Jun Xiong; Cheng-Jie Ma; Yi Dai; Jiang-Hui Ding; Fei-Long Liu; Bi-Feng Yuan; Yu-Qi Feng
Journal:  Chem Sci       Date:  2020-01-08       Impact factor: 9.825

5.  mRNA structure determines modification by pseudouridine synthase 1.

Authors:  Thomas M Carlile; Nicole M Martinez; Cassandra Schaening; Amanda Su; Tristan A Bell; Boris Zinshteyn; Wendy V Gilbert
Journal:  Nat Chem Biol       Date:  2019-09-02       Impact factor: 15.040

6.  Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B.

Authors:  Nathan W Howell; Manasses Jora; Benjamin F Jepson; Patrick A Limbach; Jane E Jackman
Journal:  RNA       Date:  2019-07-10       Impact factor: 4.942

7.  Cell culture NAIL-MS allows insight into human tRNA and rRNA modification dynamics in vivo.

Authors:  Matthias Heiss; Felix Hagelskamp; Virginie Marchand; Yuri Motorin; Stefanie Kellner
Journal:  Nat Commun       Date:  2021-01-15       Impact factor: 14.919

8.  Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells.

Authors:  Thomas M Carlile; Maria F Rojas-Duran; Boris Zinshteyn; Hakyung Shin; Kristen M Bartoli; Wendy V Gilbert
Journal:  Nature       Date:  2014-09-05       Impact factor: 49.962

9.  MODOMICS: a database of RNA modification pathways. 2017 update.

Authors:  Pietro Boccaletto; Magdalena A Machnicka; Elzbieta Purta; Pawel Piatkowski; Blazej Baginski; Tomasz K Wirecki; Valérie de Crécy-Lagard; Robert Ross; Patrick A Limbach; Annika Kotter; Mark Helm; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

10.  Broad-range RNA modification analysis of complex biological samples using rapid C18-UPLC-MS.

Authors:  Pavlina Gregorova; Nina H Sipari; L Peter Sarin
Journal:  RNA Biol       Date:  2020-12-23       Impact factor: 4.652

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  1 in total

1.  Comprehensive characterization of mRNAs associated with yeast cytosolic aminoacyl-tRNA synthetases.

Authors:  Shahar Garin; Ofri Levi; Megan E Forrest; Anthony Antonellis; Yoav S Arava
Journal:  RNA Biol       Date:  2021-06-10       Impact factor: 4.766

  1 in total

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