Literature DB >> 33682888

Interferon characterization associates with asthma and is a potential biomarker of predictive diagnosis.

Hairong Shu1, Yong Li2, Hangyu Xu1, Qing Yin1, Jianxin Song1, Minqiao Zheng3, He Li4.   

Abstract

Interferon (IFN) plays a role in immune and inflammation responses. However, the effect of IFN in asthma is still not fully clear. The present study was conducted to better understand the role of IFN signatures in asthma. Blood samples from case-control studies (study 1: 348 asthmas and 39 normal controls and validation study 2: 411 asthmas and 87 normal controls) were enrolled. The single-sample gene set enrichment analysis (ssGSEA) method was used to quantify the levels of 74 IFN signatures. Gene Ontology analysis and pathway function analysis were performed for functional analysis and a protein-protein interaction (PPI) network was constructed. The area under the curve (AUC) value was used to evaluate the diagnostic ability. In our work, IFN-γ response-DN, negative regulation of IFN-γ secretion, IFNG pathway, negative regulation of response to IFN-γ, and type 1 IFN biosynthetic process showed higher levels in asthma. Functional analysis demonstrated that pathway and biological process involved in IFN signaling pathway, regulation of type 1 IFN production and response to IFN-γ. Hub IFN-related genes were identified, and their combination as biomarker exhibited a good diagnostic capacity for asthma (AUC = 0.832). These findings offered more insight into the underlying mechanism of how IFN signatures affected asthma. The use of the easy-to-apply IFN-related genes might serve as a promising blood-based biomarker for early diagnosis of asthma.
© 2021 The Author(s).

Entities:  

Keywords:  IFN; asthma; biomarker; blood; diagnosis

Year:  2021        PMID: 33682888      PMCID: PMC7982770          DOI: 10.1042/BSR20204210

Source DB:  PubMed          Journal:  Biosci Rep        ISSN: 0144-8463            Impact factor:   3.840


  28 in total

1.  The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Authors:  Jeffrey T Leek; W Evan Johnson; Hilary S Parker; Andrew E Jaffe; John D Storey
Journal:  Bioinformatics       Date:  2012-01-17       Impact factor: 6.937

Review 2.  Omalizumab as alternative to chronic use of oral corticosteroids in severe asthma.

Authors:  Paraskevi Katsaounou; Roland Buhl; Guy Brusselle; Pascal Pfister; Rafael Martínez; Ulrich Wahn; Jean Bousquet
Journal:  Respir Med       Date:  2019-02-07       Impact factor: 3.415

Review 3.  Innate and adaptive immune responses in asthma.

Authors:  Stephen T Holgate
Journal:  Nat Med       Date:  2012-05-04       Impact factor: 53.440

Review 4.  Asthma: personalized and precision medicine.

Authors:  Giorgio W Canonica; Matteo Ferrando; Ilaria Baiardini; Francesca Puggioni; Francesca Racca; Giovanni Passalacqua; Enrico Heffler
Journal:  Curr Opin Allergy Clin Immunol       Date:  2018-02

Review 5.  Receiver operating characteristic (ROC) curves: review of methods with applications in diagnostic medicine.

Authors:  Nancy A Obuchowski; Jennifer A Bullen
Journal:  Phys Med Biol       Date:  2018-03-29       Impact factor: 3.609

Review 6.  Immune stimulatory strategies for the prevention and treatment of asthma.

Authors:  G Wohlleben; K J Erb
Journal:  Curr Pharm Des       Date:  2006       Impact factor: 3.116

7.  Asthma phenotypes and associated comorbidities in a large cohort of adolescents in Israel.

Authors:  Yossy Machluf; Rivka Farkash; Ron Rotkopf; Daniel Fink; Yoram Chaiter
Journal:  J Asthma       Date:  2019-04-24       Impact factor: 2.515

8.  IFN-stimulated Gene Expression, Type 2 Inflammation, and Endoplasmic Reticulum Stress in Asthma.

Authors:  Nirav R Bhakta; Stephanie A Christenson; Srilaxmi Nerella; Owen D Solberg; Christine P Nguyen; David F Choy; Kyle L Jung; Suresh Garudadri; Luke R Bonser; Joshua L Pollack; Lorna T Zlock; David J Erle; Charles Langelier; Joseph L Derisi; Joseph R Arron; John V Fahy; Prescott G Woodruff
Journal:  Am J Respir Crit Care Med       Date:  2018-02-01       Impact factor: 21.405

9.  Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.

Authors:  Gabriela Bindea; Bernhard Mlecnik; Marie Tosolini; Amos Kirilovsky; Maximilian Waldner; Anna C Obenauf; Helen Angell; Tessa Fredriksen; Lucie Lafontaine; Anne Berger; Patrick Bruneval; Wolf Herman Fridman; Christoph Becker; Franck Pagès; Michael R Speicher; Zlatko Trajanoski; Jérôme Galon
Journal:  Immunity       Date:  2013-10-17       Impact factor: 31.745

Review 10.  Unmet needs in asthma.

Authors:  Kevin Gruffydd-Jones
Journal:  Ther Clin Risk Manag       Date:  2019-03-14       Impact factor: 2.423

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