Literature DB >> 33675372

Insights into the genomic repertoire of Aquimarina litoralis CCMR20, a symbiont of coral Mussismilia braziliensis.

Tooba Varasteh1, Diogo Tschoeke1, Gizele Garcia1,2, Arthur Silva Lima1, Ana Paula B Moreira1, Cristiane Thompson1, Fabiano Thompson3,4.   

Abstract

Aquimarina litoralis CCMR20 originated from the coral Mussismilia braziliensis (Sebastião Gomes Reef, Brazil, summer 2010). To gain new insights into the genomic repertoire associated with symbioses, we obtained the genome sequence of this strains using Illumina sequencing. CCMR20 has a genome size of 6.3 Mb, 32.6%GC, and 5513 genes (37 tRNA and 4 rRNA). A more fine-grained examination of the gene repertoire of CCMR20 disclosed genes engaged with symbiosis (heterotrophic carbon metabolism, CAZymes, B-vitamins group, carotenoid pigment and antioxidant molecules production). Genomic evidence further expand the possible relevance of this symbiont in the health of Mussismilia holobiont.Whole Genome Shotgun project has been deposited at DDBJ/ENA/GeneBank under the accession number WEKL00000000.

Entities:  

Keywords:  Aquimarina; Coral; Genome; Mussismilia braziliensis; Symbiont

Mesh:

Year:  2021        PMID: 33675372     DOI: 10.1007/s00203-021-02194-w

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  10 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides.

Authors:  Alexander J Mann; Richard L Hahnke; Sixing Huang; Johannes Werner; Peng Xing; Tristan Barbeyron; Bruno Huettel; Kurt Stüber; Richard Reinhardt; Jens Harder; Frank Oliver Glöckner; Rudolf I Amann; Hanno Teeling
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

3.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.

Authors:  Jongsik Chun; Jae-Hak Lee; Yoonyoung Jung; Myungjin Kim; Seil Kim; Byung Kwon Kim; Young-Woon Lim
Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host-associated and free-living Aquimarina (Bacteroidetes, Flavobacteriaceae) species.

Authors:  Sandra G Silva; Jochen Blom; Tina Keller-Costa; Rodrigo Costa
Journal:  Environ Microbiol       Date:  2019-08-05       Impact factor: 5.491

6.  Microbial processes driving coral reef organic carbon flow.

Authors:  Cynthia B Silveira; Giselle S Cavalcanti; Juline M Walter; Arthur W Silva-Lima; Elizabeth A Dinsdale; David G Bourne; Cristiane C Thompson; Fabiano L Thompson
Journal:  FEMS Microbiol Rev       Date:  2017-07-01       Impact factor: 16.408

7.  Motility is involved in Silicibacter sp. TM1040 interaction with dinoflagellates.

Authors:  Todd R Miller; Robert Belas
Journal:  Environ Microbiol       Date:  2006-09       Impact factor: 5.491

8.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.

Authors:  Manuel Sánchez-Castillo; David Ruau; Adam C Wilkinson; Felicia S L Ng; Rebecca Hannah; Evangelia Diamanti; Patrick Lombard; Nicola K Wilson; Berthold Gottgens
Journal:  Nucleic Acids Res       Date:  2014-09-30       Impact factor: 19.160

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

  10 in total

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