Literature DB >> 33674802

Structural basis for inhibition of the SARS-CoV-2 RNA polymerase by suramin.

Wanchao Yin1, Xiaodong Luan2,3,4, Zhihai Li1,5, Ziwei Zhou1,5,6, Qingxing Wang6,7, Minqi Gao8, Xiaoxi Wang1, Fulai Zhou1, Jingjing Shi1, Erli You1, Mingliang Liu1, Qingxia Wang1,5, Yi Jiang1,6, Hualiang Jiang1,6, Gengfu Xiao7, Leike Zhang9,10, Xuekui Yu11,12,13, Shuyang Zhang14,15,16, H Eric Xu17,18.   

Abstract

The COVID-19 pandemic caused by nonstop infections of SARS-CoV-2 has continued to ravage many countries worldwide. Here we report that suramin, a 100-year-old drug, is a potent inhibitor of the SARS-CoV-2 RNA-dependent RNA polymerase (RdRp) and acts by blocking the binding of RNA to the enzyme. In biochemical assays, suramin and its derivatives are at least 20-fold more potent than remdesivir, the currently approved nucleotide drug for treatment of COVID-19. The 2.6 Å cryo-electron microscopy structure of the viral RdRp bound to suramin reveals two binding sites. One site directly blocks the binding of the RNA template strand and the other site clashes with the RNA primer strand near the RdRp catalytic site, thus inhibiting RdRp activity. Suramin blocks viral replication in Vero E6 cells, although the reasons underlying this effect are likely various. Our results provide a structural mechanism for a nonnucleotide inhibitor of the SARS-CoV-2 RdRp.

Entities:  

Year:  2021        PMID: 33674802     DOI: 10.1038/s41594-021-00570-0

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  2 in total

Review 1.  100 Years of Suramin.

Authors:  Natalie Wiedemar; Dennis A Hauser; Pascal Mäser
Journal:  Antimicrob Agents Chemother       Date:  2020-02-21       Impact factor: 5.191

2.  [Transposition of the temporalis muscle into an anophthalmic orbit].

Authors:  P Tessier; D Krastinova
Journal:  Ann Chir Plast       Date:  1982
  2 in total
  26 in total

1.  P2R Inhibitors Prevent Antibody-Mediated Complement Activation in an Animal Model of Neuromyelitis Optica : P2R Inhibitors Prevent Autoantibody Injury.

Authors:  Sudhakar Reddy Kalluri; Rajneesh Srivastava; Selin Kenet; Goutam K Tanti; Klaus Dornmair; Jeffrey L Bennett; Thomas Misgeld; Bernhard Hemmer; Matthias T Wyss; Marina Herwerth
Journal:  Neurotherapeutics       Date:  2022-07-12       Impact factor: 6.088

Review 2.  Beyond the vaccines: a glance at the small molecule and peptide-based anti-COVID19 arsenal.

Authors:  Kunal Nepali; Ram Sharma; Sachin Sharma; Amandeep Thakur; Jing-Ping Liou
Journal:  J Biomed Sci       Date:  2022-09-06       Impact factor: 12.771

Review 3.  Advances in Pathogenesis, Progression, Potential Targets and Targeted Therapeutic Strategies in SARS-CoV-2-Induced COVID-19.

Authors:  Hong Zhou; Wei-Jian Ni; Wei Huang; Zhen Wang; Ming Cai; Yan-Cai Sun
Journal:  Front Immunol       Date:  2022-04-05       Impact factor: 8.786

Review 4.  SARS-CoV-2: from its discovery to genome structure, transcription, and replication.

Authors:  Ayslan Castro Brant; Wei Tian; Vladimir Majerciak; Wei Yang; Zhi-Ming Zheng
Journal:  Cell Biosci       Date:  2021-07-19       Impact factor: 7.133

Review 5.  Structural biology of SARS-CoV-2: open the door for novel therapies.

Authors:  Weizhu Yan; Yanhui Zheng; Xiaotao Zeng; Bin He; Wei Cheng
Journal:  Signal Transduct Target Ther       Date:  2022-01-27

6.  Non-Nucleotide RNA-Dependent RNA Polymerase Inhibitor That Blocks SARS-CoV-2 Replication.

Authors:  Milan Dejmek; Eva Konkoľová; Luděk Eyer; Petra Straková; Pavel Svoboda; Michal Šála; Kateřina Krejčová; Daniel Růžek; Evzen Boura; Radim Nencka
Journal:  Viruses       Date:  2021-08-11       Impact factor: 5.048

Review 7.  Recent advances in developing small-molecule inhibitors against SARS-CoV-2.

Authors:  Rong Xiang; Zhengsen Yu; Yang Wang; Lili Wang; Shanshan Huo; Yanbai Li; Ruiying Liang; Qinghong Hao; Tianlei Ying; Yaning Gao; Fei Yu; Shibo Jiang
Journal:  Acta Pharm Sin B       Date:  2021-07-02       Impact factor: 14.903

8.  SARS-CoV-2 Subgenomic RNA Kinetics in Longitudinal Clinical Samples.

Authors:  Renu Verma; Eugene Kim; Giovanny Joel Martínez-Colón; Prasanna Jagannathan; Arjun Rustagi; Julie Parsonnet; Hector Bonilla; Chaitan Khosla; Marisa Holubar; Aruna Subramanian; Upinder Singh; Yvonne Maldonado; Catherine A Blish; Jason R Andrews
Journal:  Open Forum Infect Dis       Date:  2021-06-11       Impact factor: 4.423

9.  Electron Density Analysis of SARS-CoV-2 RNA-Dependent RNA Polymerase Complexes.

Authors:  Nadezhda Palko; Maria Grishina; Vladimir Potemkin
Journal:  Molecules       Date:  2021-06-28       Impact factor: 4.411

Review 10.  Structure genomics of SARS-CoV-2 and its Omicron variant: drug design templates for COVID-19.

Authors:  Can-Rong Wu; Wan-Chao Yin; Yi Jiang; H Eric Xu
Journal:  Acta Pharmacol Sin       Date:  2022-01-20       Impact factor: 7.169

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