Literature DB >> 33674797

Pycro-Manager: open-source software for customized and reproducible microscope control.

Henry Pinkard1,2,3,4, Nico Stuurman5, Ivan E Ivanov6, Nicholas M Anthony7, Wei Ouyang8, Bin Li9, Bin Yang6, Mark A Tsuchida9, Bryant Chhun6, Grace Zhang10, Ryan Mei10, Michael Anderson11,12, Douglas P Shepherd13, Ian Hunt-Isaak14, Raymond L Dunn15, Wiebke Jahr16, Saul Kato17,18,19, Loïc A Royer6, Jay R Thiagarajah11,12, Kevin W Eliceiri9, Emma Lundberg8, Shalin B Mehta6, Laura Waller10,20.   

Abstract

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Year:  2021        PMID: 33674797      PMCID: PMC8532176          DOI: 10.1038/s41592-021-01087-6

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  9 in total

Review 1.  Isotropic imaging across spatial scales with axially swept light-sheet microscopy.

Authors:  Kevin M Dean; Tonmoy Chakraborty; Stephan Daetwyler; Jinlong Lin; Gerard Garrelts; Ons M'Saad; Hannahmariam T Mekbib; Fabian F Voigt; Martina Schaettin; Esther T Stoeckli; Fritjof Helmchen; Joerg Bewersdorf; Reto Fiolka
Journal:  Nat Protoc       Date:  2022-07-13       Impact factor: 17.021

2.  Open microscopy in the life sciences: quo vadis?

Authors:  Johannes Hohlbein; Benedict Diederich; Barbora Marsikova; Emmanuel G Reynaud; Séamus Holden; Wiebke Jahr; Robert Haase; Kirti Prakash
Journal:  Nat Methods       Date:  2022-09       Impact factor: 47.990

3.  PyJAMAS: open-source, multimodal segmentation and analysis of microscopy images.

Authors:  Rodrigo Fernandez-Gonzalez; Negar Balaghi; Kelly Wang; Ray Hawkins; Katheryn Rothenberg; Christopher McFaul; Clara Schimmer; Michelle Ly; AnaMaria do Carmo; Gordana Scepanovic; Gonca Erdemci-Tandogan; Veronica Castle
Journal:  Bioinformatics       Date:  2021-08-13       Impact factor: 6.931

4.  The miEye: Bench-top super-resolution microscope with cost-effective equipment.

Authors:  Mohammad Nour Alsamsam; Aurimas Kopūstas; Meda Jurevičiūtė; Marijonas Tutkus
Journal:  HardwareX       Date:  2022-10-04

5.  Tailored approach to study Legionella infection using a lattice light sheet microscope (LLSM).

Authors:  Xiyu Yi; Haichao Miao; Jacky Kai-Yin Lo; Maher M Elsheikh; Tek-Hyung Lee; Chenfanfu Jiang; Yuliang Zhang; Brent W Segelke; K Wesley Overton; Peer-Timo Bremer; Ted A Laurence
Journal:  Biomed Opt Express       Date:  2022-07-07       Impact factor: 3.562

Review 6.  Can super-resolution microscopy become a standard characterization technique for materials chemistry?

Authors:  Shikha Dhiman; Teodora Andrian; Beatriz Santiago Gonzalez; Marrit M E Tholen; Yuyang Wang; Lorenzo Albertazzi
Journal:  Chem Sci       Date:  2021-12-01       Impact factor: 9.825

7.  DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy.

Authors:  Bin Yang; Merlin Lange; Alfred Millett-Sikking; Xiang Zhao; Jordão Bragantini; Shruthi VijayKumar; Mason Kamb; Rafael Gómez-Sjöberg; Ahmet Can Solak; Wanpeng Wang; Hirofumi Kobayashi; Matthew N McCarroll; Lachlan W Whitehead; Reto P Fiolka; Thomas B Kornberg; Andrew G York; Loic A Royer
Journal:  Nat Methods       Date:  2022-03-21       Impact factor: 28.547

8.  Enabling reactive microscopy with MicroMator.

Authors:  Zachary R Fox; Steven Fletcher; Achille Fraisse; Chetan Aditya; Sebastián Sosa-Carrillo; Julienne Petit; Sébastien Gilles; François Bertaux; Jakob Ruess; Gregory Batt
Journal:  Nat Commun       Date:  2022-04-22       Impact factor: 17.694

Review 9.  Roadmap on Digital Holography-Based Quantitative Phase Imaging.

Authors:  Vinoth Balasubramani; Małgorzata Kujawińska; Cédric Allier; Vijayakumar Anand; Chau-Jern Cheng; Christian Depeursinge; Nathaniel Hai; Saulius Juodkazis; Jeroen Kalkman; Arkadiusz Kuś; Moosung Lee; Pierre J Magistretti; Pierre Marquet; Soon Hock Ng; Joseph Rosen; Yong Keun Park; Michał Ziemczonok
Journal:  J Imaging       Date:  2021-11-26
  9 in total

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