Literature DB >> 33674780

Recent genetic connectivity and clinal variation in chimpanzees.

Jack D Lester1, Linda Vigilant2, Paolo Gratton2, Maureen S McCarthy2, Christopher D Barratt3, Paula Dieguez2, Anthony Agbor2, Paula Álvarez-Varona4, Samuel Angedakin2, Emmanuel Ayuk Ayimisin2, Emma Bailey2, Mattia Bessone2, Gregory Brazzola2, Rebecca Chancellor5, Heather Cohen2, Emmanuel Danquah6, Tobias Deschner2, Villard Ebot Egbe2, Manasseh Eno-Nku7, Annemarie Goedmakers8, Anne-Céline Granjon2, Josephine Head2, Daniela Hedwig9, R Adriana Hernandez-Aguilar4,10, Kathryn J Jeffery11, Sorrel Jones2, Jessica Junker2, Parag Kadam12, Michael Kaiser2, Ammie K Kalan2, Laura Kehoe13, Ivonne Kienast2, Kevin E Langergraber14, Juan Lapuente2,15, Anne Laudisoit16,17, Kevin Lee2, Sergio Marrocoli2, Vianet Mihindou18,19, David Morgan20, Geoffrey Muhanguzi21, Emily Neil2, Sonia Nicholl2, Christopher Orbell22, Lucy Jayne Ormsby2, Liliana Pacheco4, Alex Piel23, Martha M Robbins2, Aaron Rundus24, Crickette Sanz25,26, Lilah Sciaky2, Alhaji M Siaka27, Veronika Städele2, Fiona Stewart28, Nikki Tagg29, Els Ton8, Joost van Schijndel8, Magloire Kambale Vyalengerera2, Erin G Wessling30, Jacob Willie29, Roman M Wittig2,31, Yisa Ginath Yuh2, Kyle Yurkiw2,32, Klaus Zuberbuehler21,33,34, Christophe Boesch2, Hjalmar S Kühl2,3, Mimi Arandjelovic35.   

Abstract

Much like humans, chimpanzees occupy diverse habitats and exhibit extensive behavioural variability. However, chimpanzees are recognized as a discontinuous species, with four subspecies separated by historical geographic barriers. Nevertheless, their range-wide degree of genetic connectivity remains poorly resolved, mainly due to sampling limitations. By analyzing a geographically comprehensive sample set amplified at microsatellite markers that inform recent population history, we found that isolation by distance explains most of the range-wide genetic structure of chimpanzees. Furthermore, we did not identify spatial discontinuities corresponding with the recognized subspecies, suggesting that some of the subspecies-delineating geographic barriers were recently permeable to gene flow. Substantial range-wide genetic connectivity is consistent with the hypothesis that behavioural flexibility is a salient driver of chimpanzee responses to changing environmental conditions. Finally, our observation of strong local differentiation associated with recent anthropogenic pressures portends future loss of critical genetic diversity if habitat fragmentation and population isolation continue unabated.

Entities:  

Year:  2021        PMID: 33674780      PMCID: PMC7935964          DOI: 10.1038/s42003-021-01806-x

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  51 in total

1.  Factors affecting the amount of genomic DNA extracted from ape faeces and the identification of an improved sample storage method.

Authors:  A M Nsubuga; M M Robbins; A D Roeder; P A Morin; C Boesch; L Vigilant
Journal:  Mol Ecol       Date:  2004-07       Impact factor: 6.185

2.  New evidence for hybrid zones of forest and savanna elephants in Central and West Africa.

Authors:  Samrat Mondol; Ida Moltke; John Hart; Michael Keigwin; Lisa Brown; Matthew Stephens; Samuel K Wasser
Journal:  Mol Ecol       Date:  2015-12-12       Impact factor: 6.185

3.  Allele frequencies at microsatellite loci: the stepwise mutation model revisited.

Authors:  A M Valdes; M Slatkin; N B Freimer
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

4.  An evaluation of genetic distances for use with microsatellite loci.

Authors:  D B Goldstein; A Ruiz Linares; L L Cavalli-Sforza; M W Feldman
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

Review 5.  Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution.

Authors:  Kevin E Langergraber; Kay Prüfer; Carolyn Rowney; Christophe Boesch; Catherine Crockford; Katie Fawcett; Eiji Inoue; Miho Inoue-Muruyama; John C Mitani; Martin N Muller; Martha M Robbins; Grit Schubert; Tara S Stoinski; Bence Viola; David Watts; Roman M Wittig; Richard W Wrangham; Klaus Zuberbühler; Svante Pääbo; Linda Vigilant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

6.  Genetic and 'cultural' similarity in wild chimpanzees.

Authors:  Kevin E Langergraber; Christophe Boesch; Eiji Inoue; Miho Inoue-Murayama; John C Mitani; Toshisada Nishida; Anne Pusey; Vernon Reynolds; Grit Schubert; Richard W Wrangham; Emily Wroblewski; Linda Vigilant
Journal:  Proc Biol Sci       Date:  2010-08-18       Impact factor: 5.349

7.  Dynamics of microsatellite divergence under stepwise mutation and proportional slippage/point mutation models.

Authors:  P P Calabrese; R T Durrett; C F Aquadro
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

8.  Potential for Ebola transmission between gorilla and chimpanzee social groups.

Authors:  Peter D Walsh; Thomas Breuer; Crickette Sanz; David Morgan; Diane Doran-Sheehy
Journal:  Am Nat       Date:  2007-03-21       Impact factor: 3.926

9.  Bonobos fall within the genomic variation of chimpanzees.

Authors:  Anne Fischer; Kay Prüfer; Jeffrey M Good; Michel Halbwax; Victor Wiebe; Claudine André; Rebeca Atencia; Lawrence Mugisha; Susan E Ptak; Svante Pääbo
Journal:  PLoS One       Date:  2011-06-29       Impact factor: 3.240

10.  Identifying the minimum number of microsatellite loci needed to assess population genetic structure: A case study in fly culturing.

Authors:  Wolfgang Arthofer; Carina Heussler; Patrick Krapf; Birgit C Schlick-Steiner; Florian M Steiner
Journal:  Fly (Austin)       Date:  2017-12-01       Impact factor: 2.160

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  5 in total

1.  Estimating bonobo (Panpaniscus) and chimpanzee (Pantroglodytes) evolutionary history from nucleotide site patterns.

Authors:  Colin M Brand; Frances J White; Alan R Rogers; Timothy H Webster
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-22       Impact factor: 12.779

2.  Population dynamics and genetic connectivity in recent chimpanzee history.

Authors:  Claudia Fontsere; Martin Kuhlwilm; Carlos Morcillo-Suarez; Marina Alvarez-Estape; Jack D Lester; Paolo Gratton; Joshua M Schmidt; Paula Dieguez; Thierry Aebischer; Paula Álvarez-Varona; Anthony Agbor; Samuel Angedakin; Alfred K Assumang; Emmanuel A Ayimisin; Emma Bailey; Donatienne Barubiyo; Mattia Bessone; Andrea Carretero-Alonso; Rebecca Chancellor; Heather Cohen; Emmanuel Danquah; Tobias Deschner; Andrew Dunn; Jef Dupain; Villard E Egbe; Olga Feliu; Annemarie Goedmakers; Anne-Céline Granjon; Josephine Head; Daniela Hedwig; Veerle Hermans; R Adriana Hernandez-Aguilar; Inaoyom Imong; Sorrel Jones; Jessica Junker; Parag Kadam; Mike Kaiser; Mbangi Kambere; Magloire V Kambale; Ammie K Kalan; Ivonne Kienast; Deo Kujirakwinja; Kevin Langergraber; Juan Lapuente; Bradley Larson; Anne Laudisoit; Kevin Lee; Manuel Llana; Miquel Llorente; Sergio Marrocoli; David Morgan; Felix Mulindahabi; Mizuki Murai; Emily Neil; Sonia Nicholl; Stuart Nixon; Emma Normand; Chris Orbell; Lucy J Ormsby; Liliana Pacheco; Alex Piel; Laura Riera; Martha M Robbins; Aaron Rundus; Crickette Sanz; Lilah Sciaky; Volker Sommer; Fiona A Stewart; Nikki Tagg; Luc Roscelin Tédonzong; Els Ton; Joost van Schijndel; Virginie Vergnes; Erin G Wessling; Jacob Willie; Roman M Wittig; Yisa G Yuh; Kyle Yurkiw; Klaus Zuberbuehler; Jochen Hecht; Linda Vigilant; Christophe Boesch; Aida M Andrés; David A Hughes; Hjalmar S Kühl; Esther Lizano; Mimi Arandjelovic; Tomas Marques-Bonet
Journal:  Cell Genom       Date:  2022-06-08

3.  Attractiveness of female sexual signaling predicts differences in female grouping patterns between bonobos and chimpanzees.

Authors:  Martin Surbeck; Cédric Girard-Buttoz; Liran Samuni; Christophe Boesch; Barbara Fruth; Catherine Crockford; Roman M Wittig; Gottfried Hohmann
Journal:  Commun Biol       Date:  2021-09-23

4.  Genetic Diversity in Chimpanzee Transcriptomics Does Not Represent Wild Populations.

Authors:  Navya Shukla; Bobbie Shaban; Irene Gallego Romero
Journal:  Genome Biol Evol       Date:  2021-11-05       Impact factor: 3.416

5.  Structure of Chimpanzee Gut Microbiomes across Tropical Africa.

Authors:  Clifton P Bueno de Mesquita; Lauren M Nichols; Matthew J Gebert; Caihong Vanderburgh; Gaëlle Bocksberger; Jack D Lester; Ammie K Kalan; Paula Dieguez; Maureen S McCarthy; Anthony Agbor; Paula Álvarez Varona; Ayuk Emmanuel Ayimisin; Mattia Bessone; Rebecca Chancellor; Heather Cohen; Charlotte Coupland; Tobias Deschner; Villard Ebot Egbe; Annemarie Goedmakers; Anne-Céline Granjon; Cyril C Grueter; Josephine Head; R Adriana Hernandez-Aguilar; Kathryn J Jeffery; Sorrel Jones; Parag Kadam; Michael Kaiser; Juan Lapuente; Bradley Larson; Sergio Marrocoli; David Morgan; Badru Mugerwa; Felix Mulindahabi; Emily Neil; Protais Niyigaba; Liliana Pacheco; Alex K Piel; Martha M Robbins; Aaron Rundus; Crickette M Sanz; Lilah Sciaky; Douglas Sheil; Volker Sommer; Fiona A Stewart; Els Ton; Joost van Schijndel; Virginie Vergnes; Erin G Wessling; Roman M Wittig; Yisa Ginath Yuh; Kyle Yurkiw; Klaus Zuberbühler; Jan F Gogarten; Anna Heintz-Buschart; Alexandra N Muellner-Riehl; Christophe Boesch; Hjalmar S Kühl; Noah Fierer; Mimi Arandjelovic; Robert R Dunn
Journal:  mSystems       Date:  2021-06-22       Impact factor: 6.496

  5 in total

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