Literature DB >> 33673862

IMA genome - F14 : Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi.

Magriet A van der Nest1,2, Renato Chávez3, Lieschen De Vos4, Tuan A Duong5, Carlos Gil-Durán6, Maria Alves Ferreira7, Frances A Lane1, Gloria Levicán6, Quentin C Santana1, Emma T Steenkamp1, Hiroyuki Suzuki1, Mario Tello6, Jostina R Rakoma1, Inmaculada Vaca8, Natalia Valdés6, P Markus Wilken9, Michael J Wingfield1, Brenda D Wingfield1.   

Abstract

Draft genomes of Penicillium roqueforti, Fusarium sororula, Chalaropsis populi, and Chrysoporthe puriensis are presented. Penicillium roqueforti is a model fungus for genetics, physiological and metabolic studies, as well as for biotechnological applications. Fusarium sororula and Chrysoporthe puriensis are important tree pathogens, and Chalaropsis populi is a soil-borne root-pathogen. The genome sequences presented here thus contribute towards a better understanding of both the pathogenicity and biotechnological potential of these species.

Entities:  

Keywords:  Colombia; Eucalyptus leaf pathogen; Fusarium fujikuroi species complex (FFSC); Pinus tecunumanii

Year:  2021        PMID： 33673862     DOI： 10.1186/s43008-021-00055-1

Source DB:  PubMed          Journal:  IMA Fungus        ISSN： 2210-6340            Impact factor:   3.515


  53 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative.

Authors:  Maria Anisimova; Olivier Gascuel
Journal:  Syst Biol       Date:  2006-08       Impact factor: 15.683

4.  MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

Authors:  Brandi L Cantarel; Ian Korf; Sofia M C Robb; Genis Parra; Eric Ross; Barry Moore; Carson Holt; Alejandro Sánchez Alvarado; Mark Yandell
Journal:  Genome Res       Date:  2007-11-19       Impact factor: 9.043

5.  "Dark" Purkinje cells of the cerebellar cortex.

Authors:  C Léránth; J Hámori
Journal:  Acta Biol Acad Sci Hung       Date:  1970

6.  BLAST-EXPLORER helps you building datasets for phylogenetic analysis.

Authors:  Alexis Dereeper; Stephane Audic; Jean-Michel Claverie; Guillaume Blanc
Journal:  BMC Evol Biol       Date:  2010-01-12       Impact factor: 3.260

7.  Phylogeny.fr: robust phylogenetic analysis for the non-specialist.

Authors:  A Dereeper; V Guignon; G Blanc; S Audic; S Buffet; F Chevenet; J-F Dufayard; S Guindon; V Lefort; M Lescot; J-M Claverie; O Gascuel
Journal:  Nucleic Acids Res       Date:  2008-04-19       Impact factor: 16.971

8.  Identification and Functional Analysis of the Mycophenolic Acid Gene Cluster of Penicillium roqueforti.

Authors:  Abdiel Del-Cid; Carlos Gil-Durán; Inmaculada Vaca; Juan F Rojas-Aedo; Ramón O García-Rico; Gloria Levicán; Renato Chávez
Journal:  PLoS One       Date:  2016-01-11       Impact factor: 3.240

9.  antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.

Authors:  Kai Blin; Simon Shaw; Katharina Steinke; Rasmus Villebro; Nadine Ziemert; Sang Yup Lee; Marnix H Medema; Tilmann Weber
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

10.  Multiple recent horizontal transfers of a large genomic region in cheese making fungi.

Authors:  Kevin Cheeseman; Jeanne Ropars; Pierre Renault; Joëlle Dupont; Jérôme Gouzy; Antoine Branca; Anne-Laure Abraham; Maurizio Ceppi; Emmanuel Conseiller; Robert Debuchy; Fabienne Malagnac; Anne Goarin; Philippe Silar; Sandrine Lacoste; Erika Sallet; Aaron Bensimon; Tatiana Giraud; Yves Brygoo
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919
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  1 in total

1.  IMA Genome - F16 : Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta.

Authors:  Brenda D Wingfield; Lieschen De Vos; Andi M Wilson; Tuan A Duong; Niloofar Vaghefi; Angela Botes; Ravindra Nath Kharwar; Ramesh Chand; Barsha Poudel; Habibu Aliyu; Martin J Barbetti; ShuaiFei Chen; Pieter de Maayer; FeiFei Liu; Sudhir Navathe; Shagun Sinha; Emma T Steenkamp; Hiroyuki Suzuki; Kalonji A Tshisekedi; Magriet A van der Nest; Michael J Wingfield
Journal:  IMA Fungus       Date:  2022-02-23       Impact factor: 3.515
  1 in total

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