Literature DB >> 33673358

The Alter Retina: Alternative Splicing of Retinal Genes in Health and Disease.

Izarbe Aísa-Marín1,2, Rocío García-Arroyo1,3, Serena Mirra1,2, Gemma Marfany1,2,3.   

Abstract

Alternative splicing of mRNA is an essential mechanism to regulate and increase the diversity of the transcriptome and proteome. Alternative splicing frequently occurs in a tissue- or time-specific manner, contributing to differential gene expression between cell types during development. Neural tissues present extremely complex splicing programs and display the highest number of alternative splicing events. As an extension of the central nervous system, the retina constitutes an excellent system to illustrate the high diversity of neural transcripts. The retina expresses retinal specific splicing factors and produces a large number of alternative transcripts, including exclusive tissue-specific exons, which require an exquisite regulation. In fact, a current challenge in the genetic diagnosis of inherited retinal diseases stems from the lack of information regarding alternative splicing of retinal genes, as a considerable percentage of mutations alter splicing or the relative production of alternative transcripts. Modulation of alternative splicing in the retina is also instrumental in the design of novel therapeutic approaches for retinal dystrophies, since it enables precision medicine for specific mutations.

Entities:  

Keywords:  alternative splicing; deep intronic variants; inherited retinal dystrophies; microexons; non-canonical splice site variants; retina; splicing factors

Mesh:

Year:  2021        PMID: 33673358      PMCID: PMC7917623          DOI: 10.3390/ijms22041855

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  139 in total

1.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

Review 2.  Alternative Splicing in Genetic Diseases: Improved Diagnosis and Novel Treatment Options.

Authors:  Atze J Bergsma; Erik van der Wal; Mike Broeders; Ans T van der Ploeg; W W M Pim Pijnappel
Journal:  Int Rev Cell Mol Biol       Date:  2017-09-12       Impact factor: 6.813

Review 3.  Splicing in the pathogenesis, diagnosis and treatment of ciliopathies.

Authors:  Gabrielle Wheway; Jenny Lord; Diana Baralle
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-11-04       Impact factor: 4.490

4.  The transcription factor neural retina leucine zipper (NRL) controls photoreceptor-specific expression of myocyte enhancer factor Mef2c from an alternative promoter.

Authors:  Hong Hao; Padmaja Tummala; Eduardo Guzman; Raghuveer S Mali; Janina Gregorski; Anand Swaroop; Kenneth P Mitton
Journal:  J Biol Chem       Date:  2011-08-17       Impact factor: 5.157

5.  Targeted knockdown of Cerkl, a retinal dystrophy gene, causes mild affectation of the retinal ganglion cell layer.

Authors:  Alejandro Garanto; Javier Vicente-Tejedor; Marina Riera; Pedro de la Villa; Roser Gonzàlez-Duarte; Román Blanco; Gemma Marfany
Journal:  Biochim Biophys Acta       Date:  2012-04-19

Review 6.  SR Proteins: Binders, Regulators, and Connectors of RNA.

Authors:  Sunjoo Jeong
Journal:  Mol Cells       Date:  2017-01-26       Impact factor: 5.034

Review 7.  Transcription and splicing: A two-way street.

Authors:  Michael Tellier; Isabella Maudlin; Shona Murphy
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-03-03       Impact factor: 9.957

8.  AON-mediated Exon Skipping Restores Ciliation in Fibroblasts Harboring the Common Leber Congenital Amaurosis CEP290 Mutation.

Authors:  Xavier Gerard; Isabelle Perrault; Sylvain Hanein; Eduardo Silva; Karine Bigot; Sabine Defoort-Delhemmes; Marlèene Rio; Arnold Munnich; Daniel Scherman; Josseline Kaplan; Antoine Kichler; Jean-Michel Rozet
Journal:  Mol Ther Nucleic Acids       Date:  2012-06-26       Impact factor: 10.183

Review 9.  Realizing the potential of full-length transcriptome sequencing.

Authors:  Ashley Byrne; Charles Cole; Roger Volden; Christopher Vollmers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-10-07       Impact factor: 6.237

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  3 in total

1.  Goat AKAP12: Indel Mutation Detection, Association Analysis With Litter Size and Alternative Splicing Variant Expression.

Authors:  Zihong Kang; Yangyang Bai; Xianyong Lan; Haiyu Zhao
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

2.  RNA-Binding Proteins and Alternative Splicing Genes Are Coregulated in Human Retinal Endothelial Cells Treated with High Glucose.

Authors:  Hongran Zhao; Hui Kong; Bozhao Wang; Sihui Wu; Tianran Chen; Yan Cui
Journal:  J Diabetes Res       Date:  2022-03-09       Impact factor: 4.011

3.  CERKL, a Retinal Dystrophy Gene, Regulates Mitochondrial Transport and Dynamics in Hippocampal Neurons.

Authors:  Rocío García-Arroyo; Gemma Marfany; Serena Mirra
Journal:  Int J Mol Sci       Date:  2022-09-30       Impact factor: 6.208

  3 in total

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