Literature DB >> 33670258

Signatures of Dermal Fibroblasts from RDEB Pediatric Patients.

Arkadii K Beilin1,2, Nadezhda A Evtushenko1, Daniil K Lukyanov3,4, Nikolay N Murashkin5,6, Eduard T Ambarchian5,6, Alexander A Pushkov5, Kirill V Savostyanov5, Andrey P Fisenko5, Olga S Rogovaya2, Andrey V Vasiliev2, Ekaterina A Vorotelyak2, Nadya G Gurskaya1,2.   

Abstract

The recessive form of dystrophic epidermolysis bullosa (RDEB) is a debilitating disease caused by impairments in the junctions of the dermis and the basement membrane of the epidermis. Mutations in the COL7A1 gene induce multiple abnormalities, including chronic inflammation and profibrotic changes in the skin. However, the correlations between the specific mutations in COL7A1 and their phenotypic output remain largely unexplored. The mutations in the COL7A1 gene, described here, were found in the DEB register. Among them, two homozygous mutations and two cases of compound heterozygous mutations were identified. We created the panel of primary patient-specific RDEB fibroblast lines (FEB) and compared it with control fibroblasts from healthy donors (FHC). The set of morphological features and the contraction capacity of the cells distinguished FEB from FHC. We also report the relationships between the mutations and several phenotypic traits of the FEB. Based on the analysis of the available RNA-seq data of RDEB fibroblasts, we performed an RT-qPCR gene expression analysis of our cell lines, confirming the differential status of multiple genes while uncovering the new ones. We anticipate that our panels of cell lines will be useful not only for studying RDEB signatures but also for investigating the overall mechanisms involved in disease progression.

Entities:  

Keywords:  COL7A1; RDEB; cell culture; dermal fibroblast; differential gene expression; disease mutation; epidermolysis bullosa; extracellular matrix; splicing

Mesh:

Substances:

Year:  2021        PMID: 33670258      PMCID: PMC7918539          DOI: 10.3390/ijms22041792

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  71 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

Review 2.  Applying nonsense-mediated mRNA decay research to the clinic: progress and challenges.

Authors:  Holly A Kuzmiak; Lynne E Maquat
Journal:  Trends Mol Med       Date:  2006-06-16       Impact factor: 11.951

3.  Combinatorial Omics Analysis Reveals Perturbed Lysosomal Homeostasis in Collagen VII-deficient Keratinocytes.

Authors:  Kerstin Thriene; Björn Andreas Grüning; Olivier Bornert; Anika Erxleben; Juna Leppert; Ioannis Athanasiou; Ekkehard Weber; Dimitra Kiritsi; Alexander Nyström; Thomas Reinheckel; Rolf Backofen; Cristina Has; Leena Bruckner-Tuderman; Jörn Dengjel
Journal:  Mol Cell Proteomics       Date:  2018-01-11       Impact factor: 5.911

4.  The inversa type of recessive dystrophic epidermolysis bullosa is caused by specific arginine and glycine substitutions in type VII collagen.

Authors:  Peter C van den Akker; Jemima E Mellerio; Anna E Martinez; Lu Liu; Rowdy Meijer; Patricia J C Dopping-Hepenstal; Anthonie J van Essen; Hans Scheffer; Robert M W Hofstra; John A McGrath; Marcel F Jonkman
Journal:  J Med Genet       Date:  2010-11-26       Impact factor: 6.318

5.  StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.

Authors:  Mihaela Pertea; Geo M Pertea; Corina M Antonescu; Tsung-Cheng Chang; Joshua T Mendell; Steven L Salzberg
Journal:  Nat Biotechnol       Date:  2015-02-18       Impact factor: 54.908

6.  Characterization of molecular mechanisms underlying mutations in dystrophic epidermolysis bullosa using site-directed mutagenesis.

Authors:  David T Woodley; Yingping Hou; Sabrina Martin; Wei Li; Mei Chen
Journal:  J Biol Chem       Date:  2008-04-30       Impact factor: 5.157

7.  Pseudosyndactyly - an inflammatory and fibrotic wound healing disorder in recessive dystrophic epidermolysis bullosa.

Authors:  Jenny Breitenbach; Christina Gruber; Alfred Klausegger; Andrea Trost; Barbara Bogner; Herbert Reitsamer; Johann W Bauer
Journal:  J Dtsch Dermatol Ges       Date:  2015-12       Impact factor: 5.584

8.  Collagen VII plays a dual role in wound healing.

Authors:  Alexander Nyström; Daniela Velati; Venugopal R Mittapalli; Anja Fritsch; Johannes S Kern; Leena Bruckner-Tuderman
Journal:  J Clin Invest       Date:  2013-07-08       Impact factor: 14.808

9.  Thrombospondin-1 Is a Major Activator of TGF-β Signaling in Recessive Dystrophic Epidermolysis Bullosa Fibroblasts.

Authors:  Velina S Atanasova; Rebecca J Russell; Timothy G Webster; Qingqing Cao; Pooja Agarwal; Yok Zuan Lim; Suma Krishnan; Ignacia Fuentes; Christina Guttmann-Gruber; John A McGrath; Julio C Salas-Alanis; Andrzej Fertala; Andrew P South
Journal:  J Invest Dermatol       Date:  2019-01-23       Impact factor: 8.551

10.  PCOLCE2 encodes a functional procollagen C-proteinase enhancer (PCPE2) that is a collagen-binding protein differing in distribution of expression and post-translational modification from the previously described PCPE1.

Authors:  Barry M Steiglitz; Douglas R Keene; Daniel S Greenspan
Journal:  J Biol Chem       Date:  2002-10-20       Impact factor: 5.157

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  2 in total

1.  Molecular Effects of Mutations in Human Genetic Diseases.

Authors:  Emanuela Leonardi; Castrense Savojardo; Giovanni Minervini
Journal:  Int J Mol Sci       Date:  2022-06-08       Impact factor: 6.208

2.  hTERT-Driven Immortalization of RDEB Fibroblast and Keratinocyte Cell Lines Followed by Cre-Mediated Transgene Elimination.

Authors:  Nadezhda A Evtushenko; Arkadii K Beilin; Erdem B Dashinimaev; Rustam H Ziganshin; Anastasiya V Kosykh; Maxim M Perfilov; Alexandra L Rippa; Elena V Alpeeva; Andrey V Vasiliev; Ekaterina A Vorotelyak; Nadya G Gurskaya
Journal:  Int J Mol Sci       Date:  2021-04-07       Impact factor: 5.923

  2 in total

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