Literature DB >> 33670111

Origin and Fates of TERT Gene Copies in Polyploid Plants.

Petr Fajkus1, Vratislav Peška1, Jiří Fajkus1,2,3, Eva Sýkorová1.   

Abstract

The gene coding for the telomerase reverse transcriptase (TERT) is essential for the maintenance of telomeres. Previously we described the presence of three TERT paralogs in the allotetraploid plant Nicotiana tabacum, while a single TERT copy was identified in the paleopolyploid model plant Arabidopsis thaliana. Here we examine the presence, origin and functional status of TERT variants in allotetraploid Nicotiana species of diverse evolutionary ages and their parental genome donors, as well as in other diploid and polyploid plant species. A combination of experimental and in silico bottom-up analyses of TERT gene copies in Nicotiana polyploids revealed various patterns of retention or loss of parental TERT variants and divergence in their functions. RT-qPCR results confirmed the expression of all the identified TERT variants. In representative plant and green algal genomes, our synteny analyses show that their TERT genes were located in a conserved locus that became advantageous after the divergence of eudicots, and the gene was later translocated in several plant groups. In various diploid and polyploid species, translocation of TERT became fixed in target loci that show ancient synapomorphy.

Entities:  

Keywords:  Nicotiana; gene evolution; polyploidy; synteny; telomerase

Mesh:

Substances:

Year:  2021        PMID: 33670111      PMCID: PMC7916837          DOI: 10.3390/ijms22041783

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  47 in total

1.  Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae).

Authors:  Mark W Chase; Sandra Knapp; Antony V Cox; James J Clarkson; Yelena Butsko; Jeffrey Joseph; Vincent Savolainen; Alex S Parokonny
Journal:  Ann Bot       Date:  2003-07       Impact factor: 4.357

2.  Telomerase catalytic subunit homologs from fission yeast and human.

Authors:  T M Nakamura; G B Morin; K B Chapman; S L Weinrich; W H Andrews; J Lingner; C B Harley; T R Cech
Journal:  Science       Date:  1997-08-15       Impact factor: 47.728

Review 3.  The gene balance hypothesis: from classical genetics to modern genomics.

Authors:  James A Birchler; Reiner A Veitia
Journal:  Plant Cell       Date:  2007-02-09       Impact factor: 11.277

4.  Ancestral polyploidy in seed plants and angiosperms.

Authors:  Yuannian Jiao; Norman J Wickett; Saravanaraj Ayyampalayam; André S Chanderbali; Lena Landherr; Paula E Ralph; Lynn P Tomsho; Yi Hu; Haiying Liang; Pamela S Soltis; Douglas E Soltis; Sandra W Clifton; Scott E Schlarbaum; Stephan C Schuster; Hong Ma; Jim Leebens-Mack; Claude W dePamphilis
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

5.  BAL31-NGS approach for identification of telomeres de novo in large genomes.

Authors:  Vratislav Peška; Zdeňka Sitová; Petr Fajkus; Jiří Fajkus
Journal:  Methods       Date:  2016-09-03       Impact factor: 3.608

6.  Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Authors:  Tianzhen Zhang; Yan Hu; Wenkai Jiang; Lei Fang; Xueying Guan; Jiedan Chen; Jinbo Zhang; Christopher A Saski; Brian E Scheffler; David M Stelly; Amanda M Hulse-Kemp; Qun Wan; Bingliang Liu; Chunxiao Liu; Sen Wang; Mengqiao Pan; Yangkun Wang; Dawei Wang; Wenxue Ye; Lijing Chang; Wenpan Zhang; Qingxin Song; Ryan C Kirkbride; Xiaoya Chen; Elizabeth Dennis; Danny J Llewellyn; Daniel G Peterson; Peggy Thaxton; Don C Jones; Qiong Wang; Xiaoyang Xu; Hua Zhang; Huaitong Wu; Lei Zhou; Gaofu Mei; Shuqi Chen; Yue Tian; Dan Xiang; Xinghe Li; Jian Ding; Qiyang Zuo; Linna Tao; Yunchao Liu; Ji Li; Yu Lin; Yuanyuan Hui; Zhisheng Cao; Caiping Cai; Xiefei Zhu; Zhi Jiang; Baoliang Zhou; Wangzhen Guo; Ruiqiang Li; Z Jeffrey Chen
Journal:  Nat Biotechnol       Date:  2015-04-20       Impact factor: 54.908

7.  Three TERT genes in Nicotiana tabacum.

Authors:  Eva Sýkorová; Jana Fulnečková; Petr Mokroš; Jiří Fajkus; Miloslava Fojtová; Vratislav Peška
Journal:  Chromosome Res       Date:  2012-04-28       Impact factor: 5.239

8.  Telomerase RNAs in land plants.

Authors:  Petr Fajkus; Vratislav Peška; Michal Závodník; Miloslava Fojtová; Jana Fulnečková; Šimon Dobias; Agata Kilar; Martina Dvořáčková; Dagmar Zachová; Ivona Nečasová; Jason Sims; Eva Sýkorová; Jiří Fajkus
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

9.  Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes.

Authors:  Christian Parisod; Corinne Mhiri; K Yoong Lim; James J Clarkson; Mark W Chase; Andrew R Leitch; Marie-Angèle Grandbastien
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

10.  Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution.

Authors:  Lex Flagel; Joshua Udall; Dan Nettleton; Jonathan Wendel
Journal:  BMC Biol       Date:  2008-04-16       Impact factor: 7.431

View more
  1 in total

1.  Extraordinary diversity of telomeres, telomerase RNAs and their template regions in Saccharomycetaceae.

Authors:  Vratislav Peska; Petr Fajkus; Michal Bubeník; Václav Brázda; Natália Bohálová; Vojtěch Dvořáček; Jiří Fajkus; Sònia Garcia
Journal:  Sci Rep       Date:  2021-06-17       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.