Literature DB >> 33669551

Quantum Chemical Simulation of the Qy Absorption Spectrum of Zn Chlorin Aggregates for Artificial Photosynthesis.

Zhimo Wang1, Bingbing Suo1, Shiwei Yin2, Wenli Zou1.   

Abstract

Zn chlorin (Znchl) is easy to synthesize and has similar optical properties to those of bacteriochlorophyll c in the nature, which is expected to be used as a light-harvesting antenna system in artificial photosynthesis. In order to further explore the optical characteristics of Znchl, various sizes of a parallel layered Znchl-aggregate model and the THF-Znchl explicit solvent monomer model were constructed in this study, and their Qy excited state properties were simulated by using time-dependent density functional theory (TDDFT) and exciton theory. For the Znchl monomer, with a combination of the explicit solvent model and the implicit solvation model based on density (SMD), the calculated Qy excitation energy agreed very well with the experimental one. The Znchl aggregates may be simplified to a Zn36 model to reproduce the experimental Qy absorption spectrum by the Förster coupling theory. The proposed Znchl aggregate model provides a good foundation for the future exploration of other properties of Znchl and simulations of artificial light-harvesting antennas. The results also indicate that J-aggregrates along z-direction, due to intermolecular coordination bonds, are the dominant factor in extending the Qy band of Znchl into the near infrared region.

Entities:  

Keywords:  Qy absorption spectra; explicit solvent model; förster coupling theory; layered aggregates; time-dependent density functional theory

Mesh:

Substances:

Year:  2021        PMID: 33669551      PMCID: PMC7922025          DOI: 10.3390/molecules26041086

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  32 in total

1.  Lamellar organization of pigments in chlorosomes, the light harvesting complexes of green photosynthetic bacteria.

Authors:  J Psencík; T P Ikonen; P Laurinmäki; M C Merckel; S J Butcher; R E Serimaa; R Tuma
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

2.  Electronic Energy Transfer in Polarizable Heterogeneous Environments: A Systematic Investigation of Different Quantum Chemical Approaches.

Authors:  Casper Steinmann; Jacob Kongsted
Journal:  J Chem Theory Comput       Date:  2015-08-14       Impact factor: 6.006

Review 3.  Tailoring porphyrins and chlorins for self-assembly in biomimetic artificial antenna systems.

Authors:  Teodor Silviu Balaban
Journal:  Acc Chem Res       Date:  2005-08       Impact factor: 22.384

4.  Systematic optimization of long-range corrected hybrid density functionals.

Authors:  Jeng-Da Chai; Martin Head-Gordon
Journal:  J Chem Phys       Date:  2008-02-28       Impact factor: 3.488

5.  Alternating syn-anti bacteriochlorophylls form concentric helical nanotubes in chlorosomes.

Authors:  Swapna Ganapathy; Gert T Oostergetel; Piotr K Wawrzyniak; Michael Reus; Aline Gomez Maqueo Chew; Francesco Buda; Egbert J Boekema; Donald A Bryant; Alfred R Holzwarth; Huub J M de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-12       Impact factor: 11.205

6.  Theoretical Model of Exciton States and Ultrafast Energy Transfer in Heliobacterial Type I Homodimeric Reaction Center.

Authors:  Akihiro Kimura; Shigeru Itoh
Journal:  J Phys Chem B       Date:  2018-11-29       Impact factor: 2.991

7.  Long-range organization of bacteriochlorophyll in chlorosomes of Chlorobium tepidum investigated by cryo-electron microscopy.

Authors:  Gert T Oostergetel; Michael Reus; Aline Gomez Maqueo Chew; Donald A Bryant; Egbert J Boekema; Alfred R Holzwarth
Journal:  FEBS Lett       Date:  2007-11-05       Impact factor: 4.124

Review 8.  The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes.

Authors:  Richard J Cogdell; Andrew Gall; Jürgen Köhler
Journal:  Q Rev Biophys       Date:  2006-10-12       Impact factor: 5.318

9.  Single Molecule Fluorescence Spectroscopy of PSI Trimers from Arthrospira platensis: A Computational Approach.

Authors:  Roman Pishchalnikov; Vladimir Shubin; Andrei Razjivin
Journal:  Molecules       Date:  2019-02-25       Impact factor: 4.411

10.  Accurate Computation of the Absorption Spectrum of Chlorophyll a with Pair Natural Orbital Coupled Cluster Methods.

Authors:  Abhishek Sirohiwal; Romain Berraud-Pache; Frank Neese; Róbert Izsák; Dimitrios A Pantazis
Journal:  J Phys Chem B       Date:  2020-09-25       Impact factor: 2.991

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