Literature DB >> 33669141

Liquid Biomolecular Condensates and Viral Lifecycles: Review and Perspectives.

Temitope Akhigbe Etibor1, Yohei Yamauchi2, Maria João Amorim1.   

Abstract

Viruses are highly dependent on the host they infect. Their dependence triggers processes of virus-host co-adaptation, enabling viruses to explore host resources whilst escaping immunity. Scientists have tackled viral-host interplay at differing levels of complexity-in individual hosts, organs, tissues and cells-and seminal studies advanced our understanding about viral lifecycles, intra- or inter-species transmission, and means to control infections. Recently, it emerged as important to address the physical properties of the materials in biological systems; membrane-bound organelles are only one of many ways to separate molecules from the cellular milieu. By achieving a type of compartmentalization lacking membranes known as biomolecular condensates, biological systems developed alternative mechanisms of controlling reactions. The identification that many biological condensates display liquid properties led to the proposal that liquid-liquid phase separation (LLPS) drives their formation. The concept of LLPS is a paradigm shift in cellular structure and organization. There is an unprecedented momentum to revisit long-standing questions in virology and to explore novel antiviral strategies. In the first part of this review, we focus on the state-of-the-art about biomolecular condensates. In the second part, we capture what is known about RNA virus-phase biology and discuss future perspectives of this emerging field in virology.

Entities:  

Keywords:  HIV; LLPS; Measles; Rabies; SARS-CoV-2; Vesicular Stomatitis virus; biomolecular condensates; influenza A virus; liquid organelles; viral factories; viruses

Mesh:

Year:  2021        PMID: 33669141      PMCID: PMC7996568          DOI: 10.3390/v13030366

Source DB:  PubMed          Journal:  Viruses        ISSN: 1999-4915            Impact factor:   5.048


  215 in total

1.  Influenza A virus RNA polymerase has the ability to stutter at the polyadenylation site of a viral RNA template during RNA replication.

Authors:  H Zheng; H A Lee; P Palese; A García-Sastre
Journal:  J Virol       Date:  1999-06       Impact factor: 5.103

2.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 3.  Past, present and future: 30 years of HIV research.

Authors:  Françoise Barré-Sinoussi; Anna Laura Ross; Jean-François Delfraissy
Journal:  Nat Rev Microbiol       Date:  2013-10-28       Impact factor: 60.633

Review 4.  Phase Separation in Membrane Biology: The Interplay between Membrane-Bound Organelles and Membraneless Condensates.

Authors:  Yan G Zhao; Hong Zhang
Journal:  Dev Cell       Date:  2020-07-28       Impact factor: 12.270

5.  Composition-dependent thermodynamics of intracellular phase separation.

Authors:  Joshua A Riback; Lian Zhu; Mylene C Ferrolino; Michele Tolbert; Diana M Mitrea; David W Sanders; Ming-Tzo Wei; Richard W Kriwacki; Clifford P Brangwynne
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

Review 6.  Matter over mind: Liquid phase separation and neurodegeneration.

Authors:  Shana Elbaum-Garfinkle
Journal:  J Biol Chem       Date:  2019-03-26       Impact factor: 5.157

7.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

8.  A pneumonia outbreak associated with a new coronavirus of probable bat origin.

Authors:  Peng Zhou; Xing-Lou Yang; Xian-Guang Wang; Ben Hu; Lei Zhang; Wei Zhang; Hao-Rui Si; Yan Zhu; Bei Li; Chao-Lin Huang; Hui-Dong Chen; Jing Chen; Yun Luo; Hua Guo; Ren-Di Jiang; Mei-Qin Liu; Ying Chen; Xu-Rui Shen; Xi Wang; Xiao-Shuang Zheng; Kai Zhao; Quan-Jiao Chen; Fei Deng; Lin-Lin Liu; Bing Yan; Fa-Xian Zhan; Yan-Yi Wang; Geng-Fu Xiao; Zheng-Li Shi
Journal:  Nature       Date:  2020-02-03       Impact factor: 69.504

9.  RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.

Authors:  Briana Van Treeck; David S W Protter; Tyler Matheny; Anthony Khong; Christopher D Link; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

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  12 in total

1.  A campaign targeting a conserved Hsp70 binding site uncovers how subcellular localization is linked to distinct biological activities.

Authors:  Hao Shao; Shuhei Taguwa; Luke Gilbert; Arielle Shkedi; Sara Sannino; Christopher J Guerriero; Zachary J Gale-Day; Zapporah T Young; Jeffrey L Brodsky; Jonathan Weissman; Jason E Gestwicki; Judith Frydman
Journal:  Cell Chem Biol       Date:  2022-07-12       Impact factor: 9.039

Review 2.  Melatonin: Regulation of Viral Phase Separation and Epitranscriptomics in Post-Acute Sequelae of COVID-19.

Authors:  Doris Loh; Russel J Reiter
Journal:  Int J Mol Sci       Date:  2022-07-23       Impact factor: 6.208

Review 3.  Protein conformation and biomolecular condensates.

Authors:  Diego S Vazquez; Pamela L Toledo; Alejo R Gianotti; Mario R Ermácora
Journal:  Curr Res Struct Biol       Date:  2022-09-14

4.  Editorial: Significance of Cellular Lipids for Viral Replication and Pathogenesis.

Authors:  Ulrich Desselberger; Carolina Henritta Pohl; Hester Gertruida O'Neill
Journal:  Front Physiol       Date:  2022-04-28       Impact factor: 4.755

5.  Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions.

Authors:  Ketty C Tamburrini; Nicolas Terrapon; Vincent Lombard; Bastien Bissaro; Sonia Longhi; Jean-Guy Berrin
Journal:  Biomolecules       Date:  2021-11-04

6.  The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation.

Authors:  Sébastien Lyonnais; S Kashif Sadiq; Cristina Lorca-Oró; Laure Dufau; Sara Nieto-Marquez; Tuixent Escribà; Natalia Gabrielli; Xiao Tan; Mohamed Ouizougun-Oubari; Josephine Okoronkwo; Michèle Reboud-Ravaux; José Maria Gatell; Roland Marquet; Jean-Christophe Paillart; Andreas Meyerhans; Carine Tisné; Robert J Gorelick; Gilles Mirambeau
Journal:  Viruses       Date:  2021-11-19       Impact factor: 5.048

Review 7.  Phase separation by the SARS-CoV-2 nucleocapsid protein: Consensus and open questions.

Authors:  Sean M Cascarina; Eric D Ross
Journal:  J Biol Chem       Date:  2022-02-04       Impact factor: 5.486

8.  Experimental Evidence of Intrinsic Disorder and Amyloid Formation by the Henipavirus W Proteins.

Authors:  Giulia Pesce; Frank Gondelaud; Denis Ptchelkine; Juliet F Nilsson; Christophe Bignon; Jérémy Cartalas; Patrick Fourquet; Sonia Longhi
Journal:  Int J Mol Sci       Date:  2022-01-15       Impact factor: 5.923

9.  Identification of a Region in the Common Amino-terminal Domain of Hendra Virus P, V, and W Proteins Responsible for Phase Transition and Amyloid Formation.

Authors:  Edoardo Salladini; Frank Gondelaud; Juliet F Nilsson; Giulia Pesce; Christophe Bignon; Maria Grazia Murrali; Roxane Fabre; Roberta Pierattelli; Andrey V Kajava; Branka Horvat; Denis Gerlier; Cyrille Mathieu; Sonia Longhi
Journal:  Biomolecules       Date:  2021-09-07

Review 10.  RNA Structures and Their Role in Selective Genome Packaging.

Authors:  Liqing Ye; Uddhav B Ambi; Marco Olguin-Nava; Anne-Sophie Gribling-Burrer; Shazeb Ahmad; Patrick Bohn; Melanie M Weber; Redmond P Smyth
Journal:  Viruses       Date:  2021-09-08       Impact factor: 5.048

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