Literature DB >> 33668971

Phage-Display Based Discovery and Characterization of Peptide Ligands against WDR5.

Jiawen Cao1,2, Tiantian Fan1,2, Yanlian Li1,2, Zhiyan Du1,2, Lin Chen1,2, Ying Wang1,2, Xin Wang1,2, Jingkang Shen1,2, Xun Huang1,3, Bing Xiong1,2, Danyan Cao1,2.   

Abstract

WD40 is a ubiquitous domain presented in at least 361 human proteins and acts as scaffold to form protein complexes. Among them, WDR5 protein is an important mediator in several protein complexes to exert its functions in histone modification and chromatin remodeling. Therefore, it was considered as a promising epigenetic target involving in anti-cancer drug development. In view of the protein-protein interaction nature of WDR5, we initialized a campaign to discover new peptide-mimic inhibitors of WDR5. In current study, we utilized the phage display technique and screened with a disulfide-based cyclic peptide phage library. Five rounds of biopanning were performed and isolated clones were sequenced. By analyzing the sequences, total five peptides were synthesized for binding assay. The four peptides are shown to have the moderate binding affinity. Finally, the detailed binding interactions were revealed by solving a WDR5-peptide cocrystal structure.

Entities:  

Keywords:  WDR5; biopanning; cocrystal structure; phage display

Mesh:

Substances:

Year:  2021        PMID: 33668971      PMCID: PMC7956166          DOI: 10.3390/molecules26051225

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  34 in total

1.  WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.

Authors:  Joanna Wysocka; Tomek Swigut; Thomas A Milne; Yali Dou; Xin Zhang; Alma L Burlingame; Robert G Roeder; Ali H Brivanlou; C David Allis
Journal:  Cell       Date:  2005-06-17       Impact factor: 41.582

Review 2.  Progress in phage display: evolution of the technique and its application.

Authors:  Tomaz Bratkovic
Journal:  Cell Mol Life Sci       Date:  2010-03       Impact factor: 9.261

3.  Interaction with WDR5 promotes target gene recognition and tumorigenesis by MYC.

Authors:  Lance R Thomas; Qingguo Wang; Brian C Grieb; Jason Phan; Audra M Foshage; Qi Sun; Edward T Olejniczak; Travis Clark; Soumyadeep Dey; Shelly Lorey; Bethany Alicie; Gregory C Howard; Bryan Cawthon; Kevin C Ess; Christine M Eischen; Zhongming Zhao; Stephen W Fesik; William P Tansey
Journal:  Mol Cell       Date:  2015-03-26       Impact factor: 17.970

4.  The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4.

Authors:  A Roguev; D Schaft; A Shevchenko; W W Pijnappel; M Wilm; R Aasland; A F Stewart
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

5.  MLL-AF9-induced leukemogenesis requires coexpression of the wild-type Mll allele.

Authors:  Austin T Thiel; Peter Blessington; Tao Zou; Danielle Feather; Xinjiang Wu; Jizhou Yan; Hui Zhang; Zuguo Liu; Patricia Ernst; Gary A Koretzky; Xianxin Hua
Journal:  Cancer Cell       Date:  2010-02-17       Impact factor: 31.743

6.  Structure-Based Design of γ-Carboline Analogues as Potent and Specific BET Bromodomain Inhibitors.

Authors:  Xu Ran; Yujun Zhao; Liu Liu; Longchuan Bai; Chao-Yie Yang; Bing Zhou; Jennifer L Meagher; Krishnapriya Chinnaswamy; Jeanne A Stuckey; Shaomeng Wang
Journal:  J Med Chem       Date:  2015-06-16       Impact factor: 7.446

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Pharmacological targeting of the Wdr5-MLL interaction in C/EBPα N-terminal leukemia.

Authors:  Florian Grebien; Masoud Vedadi; Matthäus Getlik; Cheryl H Arrowsmith; Giulio Superti-Furga; Roberto Giambruno; Amit Grover; Roberto Avellino; Anna Skucha; Sarah Vittori; Ekaterina Kuznetsova; David Smil; Dalia Barsyte-Lovejoy; Fengling Li; Gennadiy Poda; Matthieu Schapira; Hong Wu; Aiping Dong; Guillermo Senisterra; Alexey Stukalov; Kilian V M Huber; Andreas Schönegger; Richard Marcellus; Martin Bilban; Christoph Bock; Peter J Brown; Johannes Zuber; Keiryn L Bennett; Rima Al-Awar; Ruud Delwel; Claus Nerlov
Journal:  Nat Chem Biol       Date:  2015-07-13       Impact factor: 15.040

9.  Structural analysis of the KANSL1/WDR5/KANSL2 complex reveals that WDR5 is required for efficient assembly and chromatin targeting of the NSL complex.

Authors:  Jorge Dias; Nhuong Van Nguyen; Plamen Georgiev; Aline Gaub; Janine Brettschneider; Stephen Cusack; Jan Kadlec; Asifa Akhtar
Journal:  Genes Dev       Date:  2014-05-01       Impact factor: 11.361

10.  Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells.

Authors:  Daniel Bode; Lu Yu; Peri Tate; Mercedes Pardo; Jyoti Choudhary
Journal:  Mol Cell Proteomics       Date:  2015-12-29       Impact factor: 5.911

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