Literature DB >> 33664152

Complete Genome Sequence of Staphylococcus epidermidis PH1-28, Isolated from the Forehead of a Hyperseborrheic Donor.

Pascal Hilaire1, Leslie Landemaine2, Sandy Contreras3, Hélène Blanquart-Goudezeune3, Patricia Siguier4, François Cornet4, Hélène Chiapello5, Valentin Loux5, Cécile Clavaud2, Stanislas C Morand6.   

Abstract

We report the complete genome sequence of Staphylococcus epidermidis commensal strain PH1-28, isolated from the forehead of a healthy donor. The assembled 2.6-Mbp genome consisted of one chromosome and five plasmids. These data will provide valuable information and important insights into the physiology and metabolism of this skin flora microorganism.
Copyright © 2021 Hilaire et al.

Entities:  

Year:  2021        PMID： 33664152      PMCID： PMC7936632          DOI： 10.1128/MRA.00165-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  26 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  The MaSuRCA genome assembler.

Authors:  Aleksey V Zimin; Guillaume Marçais; Daniela Puiu; Michael Roberts; Steven L Salzberg; James A Yorke
Journal:  Bioinformatics       Date:  2013-08-29       Impact factor: 6.937

3.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

4.  Temporal Stability of the Human Skin Microbiome.

Authors:  Julia Oh; Allyson L Byrd; Morgan Park; Heidi H Kong; Julia A Segre
Journal:  Cell       Date:  2016-05-05       Impact factor: 41.582

5.  Non-classical Immunity Controls Microbiota Impact on Skin Immunity and Tissue Repair.

Authors:  Jonathan L Linehan; Oliver J Harrison; Seong-Ji Han; Allyson L Byrd; Ivan Vujkovic-Cvijin; Alejandro V Villarino; Shurjo K Sen; Jahangheer Shaik; Margery Smelkinson; Samira Tamoutounour; Nicholas Collins; Nicolas Bouladoux; Amiran Dzutsev; Stephan P Rosshart; Jesse H Arbuckle; Chyung-Ru Wang; Thomas M Kristie; Barbara Rehermann; Giorgio Trinchieri; Jason M Brenchley; John J O'Shea; Yasmine Belkaid
Journal:  Cell       Date:  2018-01-18       Impact factor: 41.582

6.  Quality control and preprocessing of metagenomic datasets.

Authors:  Robert Schmieder; Robert Edwards
Journal:  Bioinformatics       Date:  2011-01-28       Impact factor: 6.937

7.  ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes.

Authors:  Alessandro M Varani; Patricia Siguier; Edith Gourbeyre; Vincent Charneau; Mick Chandler
Journal:  Genome Biol       Date:  2011-03-28       Impact factor: 13.583

8.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

9.  Biogeography and individuality shape function in the human skin metagenome.

Authors:  Julia Oh; Allyson L Byrd; Clay Deming; Sean Conlan; Heidi H Kong; Julia A Segre
Journal:  Nature       Date:  2014-10-02       Impact factor: 49.962

10.  MinIONQC: fast and simple quality control for MinION sequencing data.

Authors:  R Lanfear; M Schalamun; D Kainer; W Wang; B Schwessinger
Journal:  Bioinformatics       Date:  2019-02-01       Impact factor: 6.937
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