Literature DB >> 33664151

Identification of a SARS-CoV-2 Lineage B1.1.7 Virus in New York following Return Travel from the United Kingdom.

Leonardo C Caserta1, Patrick K Mitchell1, Elizabeth Plocharczyk2, Diego G Diel3.   

Abstract

Here, we report the identification and coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain (NYI.B1-7.01-21) obtained from a patient with symptoms of COVID-19 who had a recent travel history to the United Kingdom. The sample was tested by the Cayuga Health Systems laboratory as part of New York State's travel testing guidance and was sequenced at Cornell University after testing positive.
Copyright © 2021 C. Caserta et al.

Entities:  

Year:  2021        PMID： 33664151      PMCID： PMC7936631          DOI： 10.1128/MRA.00097-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  7 in total

1.  Primer3 on the WWW for general users and for biologist programmers.

Authors:  S Rozen; H Skaletsky
Journal:  Methods Mol Biol       Date:  2000

2.  W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.

Authors:  Jana Trifinopoulos; Lam-Tung Nguyen; Arndt von Haeseler; Bui Quang Minh
Journal:  Nucleic Acids Res       Date:  2016-04-15       Impact factor: 16.971

3.  Hydrophobic contribution of amino acids in peptides measured by hydrophobic interaction chromatography.

Authors:  Chih-I Liu; Keh-Ying Hsu; Ruoh-Chyu Ruaan
Journal:  J Phys Chem B       Date:  2006-05-11       Impact factor: 2.991

4.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

5.  The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2.

Authors: 
Journal:  Nat Microbiol       Date:  2020-03-02       Impact factor: 17.745

6.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

7.  Phosphorylation of the arginine/serine dipeptide-rich motif of the severe acute respiratory syndrome coronavirus nucleocapsid protein modulates its multimerization, translation inhibitory activity and cellular localization.

Authors:  Tsui-Yi Peng; Kuan-Rong Lee; Woan-Yuh Tarn
Journal:  FEBS J       Date:  2008-07-09       Impact factor: 5.542
  7 in total
  5 in total

1.  Transmission of SARS-CoV-2 within households: a remote prospective cohort study in European countries.

Authors:  Janneke D M Verberk; Marieke L A de Hoog; Ilse Westerhof; Sam van Goethem; Christine Lammens; Greet Ieven; Erwin de Bruin; Dirk Eggink; Julia A Bielicki; Samuel Coenen; Janko van Beek; Marc J M Bonten; Herman Goossens; Patricia C J L Bruijning-Verhagen
Journal:  Eur J Epidemiol       Date:  2022-05-28       Impact factor: 12.434

2.  SARS-CoV-2 B.1.1.7 Variant Infection in Malayan Tigers, Virginia, USA.

Authors:  Patrick K Mitchell; Mathias Martins; Tara Reilly; Leonardo C Caserta; Renee R Anderson; Brittany D Cronk; Julia Murphy; Erin L Goodrich; Diego G Diel
Journal:  Emerg Infect Dis       Date:  2021-12       Impact factor: 6.883

3.  Nucleocapsid mutations R203K/G204R increase the infectivity, fitness, and virulence of SARS-CoV-2.

Authors:  Haibo Wu; Na Xing; Kaiwen Meng; Beibei Fu; Weiwei Xue; Pan Dong; Wanyan Tang; Yang Xiao; Gexin Liu; Haitao Luo; Wenzhuang Zhu; Xiaoyuan Lin; Geng Meng; Zhenglin Zhu
Journal:  Cell Host Microbe       Date:  2021-11-13       Impact factor: 21.023

4.  Identifying SARS-CoV-2 Lineage Mutation Hallmarks and Correlating Them With Clinical Outcomes in Egypt: A Pilot Study.

Authors:  Sara H A Agwa; Hesham Elghazaly; Mahmoud Shawky El Meteini; Yahia A Yahia; Radwa Khaled; Aya M Abd Elsamee; Reham M Darwish; Shaimaa M Elsayed; Hala Hafez; Basma S Mahmoud; Fouda Em; Marwa Matboli
Journal:  Front Mol Biosci       Date:  2022-03-08

5.  Equine Anti-SARS-CoV-2 Serum (ECIG) Binds to Mutated RBDs and N Proteins of Variants of Concern and Inhibits the Binding of RBDs to ACE-2 Receptor.

Authors:  Sonia Aparecida Andrade; João Victor Batalha-Carvalho; Rui Curi; Fan Hui Wen; Dimas Tadeu Covas; Ana Marisa Chudzinski-Tavassi; Ana Maria Moro
Journal:  Front Immunol       Date:  2022-07-11       Impact factor: 8.786
  5 in total

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