Literature DB >> 33664147

Draft Genome Sequences of Seven Vibrio cholerae Isolates from Adult Patients in Qatar.

Ameena Al Malki1, Kyle D Brumfield2,3, Clement K M Tsui4,5,6, Anjana Anand1, Shah M Rashed2, Emad Ibrahim7,8, Hamad Al Shamari1, Anwar Huq2, Rita R Colwell2,3, Rashmi Fotedar9.   

Abstract

We report the draft genome sequences of seven Vibrio cholerae isolates from patients. Four isolates were profiled as multilocus sequence type 69, serogroup O1, a subset of seventh-pandemic El Tor clonal isolates. Presented here are genome assemblies and evidence for major pathogenicity islands, virulence factors, and antimicrobial resistance genes.
Copyright © 2021 Al Malki et al.

Entities:  

Year:  2021        PMID： 33664147      PMCID： PMC7936645          DOI： 10.1128/MRA.01489-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  8 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

3.  Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae.

Authors:  David R Greig; Ulf Schaefer; Sophie Octavia; Ebony Hunter; Marie A Chattaway; Timothy J Dallman; Claire Jenkins
Journal:  J Clin Microbiol       Date:  2018-10-25       Impact factor: 5.948

Review 4.  Emergence, ecology and dispersal of the pandemic generating Vibrio cholerae lineage.

Authors:  Mohammad T Islam; Munirul Alam; Yan Boucher
Journal:  Int Microbiol       Date:  2017-09       Impact factor: 2.479

5.  Genomic diversity of 2010 Haitian cholera outbreak strains.

Authors:  Nur A Hasan; Seon Young Choi; Mark Eppinger; Philip W Clark; Arlene Chen; Munirul Alam; Bradd J Haley; Elisa Taviani; Erin Hine; Qi Su; Luke J Tallon; Joseph B Prosper; Keziah Furth; M M Hoq; Huai Li; Claire M Fraser-Liggett; Alejandro Cravioto; Anwar Huq; Jacques Ravel; Thomas A Cebula; Rita R Colwell
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

6.  Laboratory Techniques Used to Maintain and Differentiate Biotypes of Vibrio cholerae Clinical and Environmental Isolates.

Authors:  Kyle D Brumfield; Bailey M Carignan; Jordan N Ray; Panagiota E Jumpre; Mike S Son
Journal:  J Vis Exp       Date:  2017-05-30       Impact factor: 1.355

7.  Identification of acquired antimicrobial resistance genes.

Authors:  Ea Zankari; Henrik Hasman; Salvatore Cosentino; Martin Vestergaard; Simon Rasmussen; Ole Lund; Frank M Aarestrup; Mette Voldby Larsen
Journal:  J Antimicrob Chemother       Date:  2012-07-10       Impact factor: 5.790

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
  8 in total

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