Literature DB >> 33664141

Complete and Draft Genome Sequences of Aerobic Methanotrophs Isolated from a Riparian Wetland.

Ohana Yonara de Assis Costa1, Marion Meima-Franke1, Paul L E Bodelier2.   

Abstract

Wetlands are important sources of methane emissions, and the impacts of these emissions can be mitigated by methanotrophic bacteria. The genomes of methanotrophs Methylomonas sp. strain LL1 and Methylosinus sp. strain H3A, as well as Methylocystis sp. strains H4A, H15, H62, and L43, were sequenced and are reported here.
Copyright © 2021 de Assis Costa et al.

Entities:  

Year:  2021        PMID： 33664141      PMCID： PMC7936639          DOI： 10.1128/MRA.01438-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  12 in total

1.  New DGGE strategies for the analyses of methanotrophic microbial communities using different combinations of existing 16S rRNA-based primers.

Authors:  Paul L E Bodelier; Marion Meima-Franke; Gabriel Zwart; Hendrikus J Laanbroek
Journal:  FEMS Microbiol Ecol       Date:  2004-12-08       Impact factor: 4.194

2.  Microbial minorities modulate methane consumption through niche partitioning.

Authors:  Paul L E Bodelier; Marion Meima-Franke; Cornelis A Hordijk; Anne K Steenbergh; Mariet M Hefting; Levente Bodrossy; Martin von Bergen; Jana Seifert
Journal:  ISME J       Date:  2013-06-20       Impact factor: 10.302

3.  BUSCO: Assessing Genome Assembly and Annotation Completeness.

Authors:  Mathieu Seppey; Mosè Manni; Evgeny M Zdobnov
Journal:  Methods Mol Biol       Date:  2019

4.  Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Authors:  Chen-Shan Chin; David H Alexander; Patrick Marks; Aaron A Klammer; James Drake; Cheryl Heiner; Alicia Clum; Alex Copeland; John Huddleston; Evan E Eichler; Stephen W Turner; Jonas Korlach
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

5.  SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.

Authors:  Yuxin Chen; Yongsheng Chen; Chunmei Shi; Zhibo Huang; Yong Zhang; Shengkang Li; Yan Li; Jia Ye; Chang Yu; Zhuo Li; Xiuqing Zhang; Jian Wang; Huanming Yang; Lin Fang; Qiang Chen
Journal:  Gigascience       Date:  2018-01-01       Impact factor: 6.524

6.  Spatial patterns of methanotrophic communities along a hydrological gradient in a riparian wetland.

Authors:  Sascha Krause; Marion Meima-Franke; Mariet M Hefting; Paul L E Bodelier
Journal:  FEMS Microbiol Ecol       Date:  2013-03-11       Impact factor: 4.194

7.  Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils.

Authors:  Paul L E Bodelier; Marie-Jose Bär-Gilissen; Marion Meima-Franke; Kees Hordijk
Journal:  Ecol Evol       Date:  2012-01       Impact factor: 2.912

8.  Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.

Authors:  Mark J Chaisson; Glenn Tesler
Journal:  BMC Bioinformatics       Date:  2012-09-19       Impact factor: 3.169

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
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