Literature DB >> 33664136

Complete Genome Sequence of a Pseudomonas Species Isolated from Tailings Pond Water in Alberta, Canada.

Steven Shideler1, John Headley2, Jeff Gauthier3, Irena Kukavica-Ibrulj3, Roger C Levesque3, Shawn Lewenza4,5.   

Abstract

We report the complete genome sequence of strain OST1909, belonging to a Pseudomonas species. The genome size is 6,306,352 bp, with a G+C content of 59.6%. The isolate was recovered from oil sands process-affected water (OSPW), despite the numerous toxic compounds that accumulate in oil sands tailings ponds.
Copyright © 2021 Shideler et al.

Entities:  

Year:  2021        PMID： 33664136      PMCID： PMC7936634          DOI： 10.1128/MRA.01174-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  8 in total

Review 1.  The toxicity of oil sands process-affected water (OSPW): A critical review.

Authors:  Chao Li; Li Fu; James Stafford; Miodrag Belosevic; Mohamed Gamal El-Din
Journal:  Sci Total Environ       Date:  2017-06-11       Impact factor: 7.963

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

3.  Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.

Authors:  Luca Freschi; Julie Jeukens; Irena Kukavica-Ibrulj; Brian Boyle; Marie-Josée Dupont; Jérôme Laroche; Stéphane Larose; Halim Maaroufi; Joanne L Fothergill; Matthew Moore; Geoffrey L Winsor; Shawn D Aaron; Jean Barbeau; Scott C Bell; Jane L Burns; Miguel Camara; André Cantin; Steve J Charette; Ken Dewar; Éric Déziel; Keith Grimwood; Robert E W Hancock; Joe J Harrison; Stephan Heeb; Lars Jelsbak; Baofeng Jia; Dervla T Kenna; Timothy J Kidd; Jens Klockgether; Joseph S Lam; Iain L Lamont; Shawn Lewenza; Nick Loman; François Malouin; Jim Manos; Andrew G McArthur; Josie McKeown; Julie Milot; Hardeep Naghra; Dao Nguyen; Sheldon K Pereira; Gabriel G Perron; Jean-Paul Pirnay; Paul B Rainey; Simon Rousseau; Pedro M Santos; Anne Stephenson; Véronique Taylor; Jane F Turton; Nicholas Waglechner; Paul Williams; Sandra W Thrane; Gerard D Wright; Fiona S L Brinkman; Nicholas P Tucker; Burkhard Tümmler; Craig Winstanley; Roger C Levesque
Journal:  Front Microbiol       Date:  2015-09-29       Impact factor: 5.640

4.  Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.

Authors:  Daniel Garrido-Sanz; Jan P Meier-Kolthoff; Markus Göker; Marta Martín; Rafael Rivilla; Miguel Redondo-Nieto
Journal:  PLoS One       Date:  2016-02-25       Impact factor: 3.240

5.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

6.  MinION-Based DNA Barcoding of Preserved and Non-Invasively Collected Wildlife Samples.

Authors:  Adeline Seah; Marisa C W Lim; Denise McAloose; Stefan Prost; Tracie A Seimon
Journal:  Genes (Basel)       Date:  2020-04-18       Impact factor: 4.096

7.  TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.

Authors:  Jan P Meier-Kolthoff; Markus Göker
Journal:  Nat Commun       Date:  2019-05-16       Impact factor: 14.919

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
  8 in total

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