| Literature DB >> 33661754 |
Jenna M Reps1, Chungsoo Kim2, Ross D Williams3, Aniek F Markus3, Cynthia Yang3, Talita Duarte-Salles4, Thomas Falconer5, Jitendra Jonnagaddala6, Andrew Williams7, Sergio Fernández-Bertolín4, Scott L DuVall8, Kristin Kostka9, Gowtham Rao1, Azza Shoaibi1, Anna Ostropolets5, Matthew E Spotnitz5, Lin Zhang10,11, Paula Casajust12, Ewout W Steyerberg13,14, Fredrik Nyberg15, Benjamin Skov Kaas-Hansen16,17, Young Hwa Choi18, Daniel Morales19, Siaw-Teng Liaw6, Maria Tereza Fernandes Abrahão20, Carlos Areia21, Michael E Matheny22, Kristine E Lynch8, María Aragón4, Rae Woong Park23, George Hripcsak5, Christian G Reich9, Marc A Suchard24, Seng Chan You23, Patrick B Ryan1, Daniel Prieto-Alhambra25, Peter R Rijnbeek3.
Abstract
BACKGROUND: SARS-CoV-2 is straining health care systems globally. The burden on hospitals during the pandemic could be reduced by implementing prediction models that can discriminate patients who require hospitalization from those who do not. The COVID-19 vulnerability (C-19) index, a model that predicts which patients will be admitted to hospital for treatment of pneumonia or pneumonia proxies, has been developed and proposed as a valuable tool for decision-making during the pandemic. However, the model is at high risk of bias according to the "prediction model risk of bias assessment" criteria, and it has not been externally validated.Entities:
Keywords: C-19; COVID-19; bias; datasets; decision-making; external validation; hospitalization; modeling; observation; prediction; prognostic model; risk; transportability
Year: 2021 PMID: 33661754 PMCID: PMC8023380 DOI: 10.2196/21547
Source DB: PubMed Journal: JMIR Med Inform
Characteristics of patients at baseline in MDCR (database similar to the development data) and the data sets with COVID-19 data.
| Predictor | Target population hospitalization during 30 days after index by data set | ||||||||
| Medicare supplemental | HIRAa | SIDIAPb | VAc | ||||||
| Required | None | Required | None | Required | None | Required | None | ||
| Mean age (years) | 80.92 | 76.41 | 65.53 | 45.09 | 63.28 | 49.61 | 69.64 | 58.07 | |
| Mean number of inpatient visits in prior 365 days | 0.58 | 0.35 | 1.38 | 0.68 | —d | — | 0.32 | 0.22 | |
| Male sex (%) | 52 | 45 | 56 | 46 | 59 | 43 | 95 | 80 | |
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| |||||||||
| Acute rheumatic heart disease | 0 | 0 | 0 | 0 | — | — | — | — | |
| Chronic obstructive pulmonary disease and bronchiectasis | 0.43 | 0.25 | 0.38 | 0.21 | 0.06 | 0.03 | 0.27 | 0.21 | |
| Chronic rheumatic heart disease | 0.03 | 0.02 | 0 | 0 | — | — | — | — | |
| Coronary atherosclerosis and other heart disease | 0.19 | 0.15 | 0.21 | 0.09 | 0.02 | 0.01 | 0.17 | 0.13 | |
| Diabetes mellitus with complication | 0.24 | 0.18 | 0.31 | 0.13 | 0.03 | 0.01 | 0.38 | 0.24 | |
| Diabetes mellitus without complication | 0.38 | 0.32 | 0.43 | 0.20 | 0.13 | 0.05 | 0.50 | 0.32 | |
| Heart failure | 0.37 | 0.20 | 0.20 | 0.07 | 0.02 | 0.01 | 0.23 | 0.12 | |
| Other and ill-defined heart disease | 0.25 | 0.15 | 0.02 | 0.01 | 0.01 | 0.01 | 0.11 | 0.06 | |
| Other specified and unspecified lower respiratory disease | 0.73 | 0.59 | 0.92 | 0.88 | 0.43 | 0.38 | 0.58 | 0.45 | |
| Pneumonia (except that caused by tuberculosis) | 0.39 | 0.20 | 0.31 | 0.15 | 0.06 | 0.06 | 0.20 | 0.14 | |
| Pulmonary heart disease | 0.09 | 0.04 | 0.00 | 0.00 | — | — | — | — | |
aHIRA: Health Insurance Review and Assessment.
bSIDIAP: Information System for Research in Primary Care.
cVA: Department of Veterans Affairs.
d—: Data not included due to a low cell count.
External validation of the COVID-19 vulnerability index model on COVID-19 data. The target cohort was patients with an outpatient or emergency department visit with a COVID-19–positive record in 2020 and no symptoms in the prior 60 days.
| Database | Target size, n | Outcome size, n (%) | AUROCa (95% CI)b | AUPRCc |
| HIRAd | 1985 | 89 (4.48) | 0.56 (0.488-0.636) | 0.07 |
| SIDIAPe | 37950 | 1223 (3.22) | 0.363 | 0.03 |
| VAf | 1446 | 149 (10.30) | 0.529 (0.473-0.584) | 0.14 |
aAUROC: area under the receiver operating characteristic curve.
bThe 95% CI is reported when the outcome count is <1000.
cAUPRC: area under the precision recall curve.
dHIRA: Health Insurance Review and Assessment.
eSIDIAP: Information System for Research in Primary Care.
fVA: Department of Veterans Affairs.
Figure 1Receiver operating characteristic and calibration plots of the COVID-19 vulnerability index model for the three data sets with sufficient and suitable COVID-19 data. HIRA: Health Insurance Review and Assessment; SIDIAP: Information System for Research in Primary Care; VA-OMOP: Department of Veterans Affairs– Observational Medical Outcomes Partnership.
External validation of the COVID-19 vulnerability index model on influenza patient data (non–COVID-19 data).
| Database | Target population size, n | Outcome size, n (%) | AUROCa (95% CI)b | AUPRCc |
| Medicaid | 536,806 | 32,987 (6.15) | 0.68 | 0.16 |
| Japanese Medical Data Center | 1,276,478 | 728 (0.06) | 0.58 (0.55-0.60) | 0.004 |
| Medicare supplemental | 248,989 | 31,059 (12.47) | 0.65 | 0.21 |
| Commercial Claims and Encounters | 3,146,801 | 33,824 (1.07) | 0.58 | 0.04 |
| Optum EHRd | 1,654,157 | 34,229 (2.07) | 0.62 | 0.07 |
| ClinFormatics | 2,082,277 | 105,030 (5.04) | 0.67 | 0.17 |
| Ajou University School of Medicine | 3105 | 49 (1.58) | 0.52 (0.41-0.63) | 0.04 |
| Tufts Medical Center Research Data Warehouse | 6272 | 147 (2.34) | 0.63 (0.58-0.69) | 0.06 |
| Australia Electronic Practice–Based Research Network | 2793 | 29 (1.04) | 0.59 (0.45-0.72) | 0.03 |
| Columbia University Irving Medical Center | 27,356 | 1121 (5.10) | 0.64 | 0.10 |
| Integrated Primary Care Information | 29,132 | 22 (0.08) | 0.40 (0.26-0.54) | 0.00 |
| SIDIAPe | 415,119 | 512 (0.12) | 0.49 (0.45-0.52) | 0.00 |
aAUROC: area under the receiver operating characteristic curve.
bThe 95% CI is reported when the outcome count is <1000.
cAUPRC: area under the precision recall curve.
dEHR: electronic health record.
eSIDIAP: Information System for Research in Primary Care.