| Literature DB >> 33661577 |
Ke Gong1, Li Xie1, Zhong-Shi Wu1, Xia Xie1, Xing-Xing Zhang2, Jin-Lan Chen1.
Abstract
BACKGROUND: Leigh syndrome, the most common mitochondrial syndrome in pediatrics, has diverse clinical manifestations and is genetically heterogeneous. Pathogenic mutations in more than 75 genes of two genomes (mitochondrial and nuclear) have been identified. PDHA1 encoding the E1 alpha subunit is an X-chromosome gene whose mutations cause pyruvate dehydrogenase complex deficiency.Entities:
Keywords: Guillain-Barré syndrome; Leigh syndrome; PDHA1 mutation; clinical exome sequencing; neurodegenerative disease
Mesh:
Substances:
Year: 2021 PMID: 33661577 PMCID: PMC8123737 DOI: 10.1002/mgg3.1651
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
FIGURE 1MRI of the head and spinal cord showing multiple lesions. (a and b) Axial T2‐weighted and coronal FLAIR brain MRI shows hyperintensity in the left basal ganglia region (red arrow). (c) Sagittal T2‐weighted cervical spine MRI shows hyperintensity in the medulla oblongata (red arrow). (d) Axial T2‐weighted brain MRI shows hyperintensity in the left midbrain (red arrow)
FIGURE 2Sanger sequencing results. (a) Sequencing reveals a hemizygous mutation (NM_000284.4:c.1167_1170del mutation) in the patient. The mutation was identified at the red arrow in the PDHA1 and resulted in the deletion of basic CAGT, at the chromosomal location chrX:19377758. (b and c) Sequencing results of the patient's father and mother
Predicted results of protein primary structure comparison
| Number of amino acids | Molecular weight | Formula | Total number of atoms | Theoretical pI | Extinction coefficients | Grand average of hydropathicity | Aliphatic index | Estimated half‐life | Instability index | |
|---|---|---|---|---|---|---|---|---|---|---|
| Wildtype | 390 | 43295.63 | C1899H3010N540O566S26 | 6041 | 8.35 | 38570 | −0.312 | 77.59 | 30 h | 33.06 |
| Mutant | 421 | 46961.79 | C2059H3272N592O613S26 | 6562 | 8.59 | 40060 | −0.376 | 77.65 | 30 h | 37.72 |
FIGURE 3Comparison and analysis of the secondary structure of normal protein and mutant protein. (a) Wild type amino acid sequence. The Lys circled in red indicated that the frameshift mutation has changed from that position. (b) Mutant amino acid sequence. The red rectangles indicated the increased and changed amino acid sequence caused by splicing mutations compared with the normal ones. The part marked by the red line was the difference in secondary structure between the wild type and the mutant. The first three amino acids at the beginning of the gene frameshift mutation site were Lys, Ser and Val the same as the wild type. In fact, for the amino acid sequence, the first amino acid change was at the fourth amino acid. Lys replaced Ser, and the amino acid sequence behind it continued to extend until the next stop site. OBS_sec: Observations of secondary structure. PROF_sec: Predicted secondary structure. Rel_sec: The reliability of the predicted secondary structure. SUB_sec: A collection of predicted secondary structures. H: Helix, E: folding, L: Coiled. O_3_acc: Observations of relatively hydrophilic surfaces. P _3_acc: Predicted observations of relatively hydrophilic surfaces. Rel_acc: The reliability of the predicted hydrophilic surface. SUB_acc: A collection of predicted hydrophilic surfaces
FIGURE 4Comparative analysis of the tertiary structure of the normal protein and mutant protein. (a) Wild type, (b) Mutant type. Compared with the wild type, the mutant type has changed the structure of the protein end, as indicated by the white arrow