Literature DB >> 33659297

Spatial Image Correlation Spectroscopy (ICS): A Technique for Average Size Determination of Subcellular Accumulated Structures from Fluorescence Microscopic Images.

Akira Kitamura1, Masakata Kinjo1.   

Abstract

Size determination of subcellular structures such as inclusion bodies (IBs) and granules from fluorescent images is important for identification and structural characterization. However, it is often time-consuming just for the comparison of the average size of the structures. Here, we introduce a high-throughput procedure to represent the average size of structures in fluorescent images using Spatial Image Correlation Spectroscopy (SICS). This procedure provides an easier comparison of bodies and granular structures such as inclusion bodies (IBs) including misfolded protein aggregation, granules containing RNA (e.g., stress granules and processing bodies).
Copyright © 2020 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Autocorrelation function; Granules; Image analysis; Inclusion body; Protein aggregation; Spatial ICS

Year:  2020        PMID: 33659297      PMCID: PMC7842500          DOI: 10.21769/BioProtoc.3624

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  8 in total

Review 1.  Advances in image correlation spectroscopy: measuring number densities, aggregation states, and dynamics of fluorescently labeled macromolecules in cells.

Authors:  David L Kolin; Paul W Wiseman
Journal:  Cell Biochem Biophys       Date:  2007-10-02       Impact factor: 2.194

Review 2.  Fluorescence techniques in developmental biology.

Authors:  Sapthaswaran Veerapathiran; Thorsten Wohland
Journal:  J Biosci       Date:  2018-07       Impact factor: 1.826

3.  Homodimerization of glucocorticoid receptor from single cells investigated using fluorescence correlation spectroscopy and microwells.

Authors:  Sho Oasa; Akira Sasaki; Johtaro Yamamoto; Shintaro Mikuni; Masataka Kinjo
Journal:  FEBS Lett       Date:  2015-07-13       Impact factor: 4.124

4.  Determination of cytoplasmic optineurin foci sizes using image correlation spectroscopy.

Authors:  Akira Kitamura; Hiroki Shimizu; Masataka Kinjo
Journal:  J Biochem       Date:  2018-09-01       Impact factor: 3.387

Review 5.  Protein aggregation and neurodegenerative disease.

Authors:  Christopher A Ross; Michelle A Poirier
Journal:  Nat Med       Date:  2004-07       Impact factor: 53.440

Review 6.  RNA granules.

Authors:  Paul Anderson; Nancy Kedersha
Journal:  J Cell Biol       Date:  2006-03-06       Impact factor: 10.539

Review 7.  Conformational analysis of misfolded protein aggregation by FRET and live-cell imaging techniques.

Authors:  Akira Kitamura; Kazuhiro Nagata; Masataka Kinjo
Journal:  Int J Mol Sci       Date:  2015-03-16       Impact factor: 5.923

Review 8.  State-of-the-Art Fluorescence Fluctuation-Based Spectroscopic Techniques for the Study of Protein Aggregation.

Authors:  Akira Kitamura; Masataka Kinjo
Journal:  Int J Mol Sci       Date:  2018-03-23       Impact factor: 5.923

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.